Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05425 ATGGATTTTCAAGTCGTTGTTCTCGCCGGCGGCGTCTCCAAAAAACTCACCCCTCTCGTTTCAAAGGAGCTTCCGAATGCTTTACTTCCGGTGGCGAACCGTCCGCTTCTCTCTTACGTTGTCGAGCTTTTGGAGCTTAGCAACCTTAAAGATCTCATCGTGGTAGTTGAAGGTCAAGATGCTGCTCTTAACGTTGGGGCGTGGATTTCGGGAGCTTATGCCGATCGCCTCCATGTCGAGGTTGCTGCGGTTCCTGAGGATGTGGGAACAGCTGGTGCAATTCGAGCAATTGCACGCCACCTATACGCGAAAGACATTTTGATTGTCAGCGGTGATCTTGTTTCTGATGTGCCGATTGGTGCTGTTGCCGCTACTCATCGACGGCATGATGCGGTTGTCACTGCTTTGCTTTGTAATTCTCCTGTAAGTGGACCTTTAGAGTCGGTGTCCTCTGGTGGGAAAGACAAAACCAAGAAACCTGGCCGCTATGATTTGATAGGGCTGGACCCTACGAAACAGTTTTTACTTCATATAGCAACTGGAGCTGAAGTTGAAAAAGATCTTCGAATTCAGAAGAGCATACTCCGTGCCGTTGGCCAGATAGAAATAAGAGCTGATCTAATGGATGCCCACTTGTATGCATTCAAAAGATCAGTTCTACTAGAAGTTCTAGATCAGAAGTGTGAATTTCAAAGCTTAAAACATGATGTATTACCATATCTTGTCCGCAGCCAACTGAAATCGGAAGTATTATTAAATGGAACACCACAAGCAGAAGAAAATGGAACTGAGAAGGGTATTTCTCAAAAGAATCAACAAATGTTATCTCAAATACTTGCTAATGCATCTGAGCCGACATTTCATCTACGTCATGCACTTAGTACTAATGGTTCTGACTCTGTTCGGAGAACCCATAAATGCTGTGTCTATATTGCTGGAAGTAGCAAGTACTGTGCTCGCCTGAATTCTATACAAGCATACAATGATATAAACCGGGATGTGATAGGAGAAGCTAGTCATTTGTCAGGGTATTCCTTCTCTGCTCATAACAACATTATCCATCCCACTGCAGAGCTTGGGACAAAAACAACTGTAGGACCACATTGTATGCTGGGGGAAGGTTCACTGATGGGTGACAAGTGCAGTGTAAAACGATCTGTCATTGGCCGCCACTGTAGGATAGGTGCCAATGTTAAGGTTGTTAATTCAGTAGTTATGAACCATGTTACTATCGGTGATTTTTGTTCAATCCAAGGTTCTGTCATATGCAGCAATGTACAGCTCCAAGAACGTGCAATACTAAAAGATTGCCAAGTCGGAGCAGGTTTCGTGGTCACGGCAGGTAGTGAGTGCAAAGGAGAGGTATTGGCTAAGAAATGA 1380 0.4457 MDFQVVVLAGGVSKKLTPLVSKELPNALLPVANRPLLSYVVELLELSNLKDLIVVVEGQDAALNVGAWISGAYADRLHVEVAAVPEDVGTAGAIRAIARHLYAKDILIVSGDLVSDVPIGAVAATHRRHDAVVTALLCNSPVSGPLESVSSGGKDKTKKPGRYDLIGLDPTKQFLLHIATGAEVEKDLRIQKSILRAVGQIEIRADLMDAHLYAFKRSVLLEVLDQKCEFQSLKHDVLPYLVRSQLKSEVLLNGTPQAEENGTEKGISQKNQQMLSQILANASEPTFHLRHALSTNGSDSVRRTHKCCVYIAGSSKYCARLNSIQAYNDINRDVIGEASHLSGYSFSAHNNIIHPTAELGTKTTVGPHCMLGEGSLMGDKCSVKRSVIGRHCRIGANVKVVNSVVMNHVTIGDFCSIQGSVICSNVQLQERAILKDCQVGAGFVVTAGSECKGEVLAKK 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05425 459 SUPERFAMILY Nucleotide-diphospho-sugar transferases 4 425 IPR029044 -
Vivi5g05425 459 CDD LbH_eIF2B_gamma_C 370 450 - -
Vivi5g05425 459 Pfam Nucleotidyl transferase 6 142 IPR005835 GO:0009058
Vivi5g05425 459 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT GAMMA 1 459 - -
Vivi5g05425 459 Gene3D Hexapeptide repeat proteins 349 455 - -
Vivi5g05425 459 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 1 348 IPR029044 -
Vivi5g05425 459 CDD eIF-2B_gamma_N 3 220 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05425 314 450 Eukaryotic Initiation Factors Gene Family AT4G18300 29.221 1.86e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05425 K03241 - gmx:100783346 800.045