Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05417 ATGGCCAGACCTTTAGAGAGAATCGCCGATATCAACGACAAGAAGGAGCTATGGAAGGTTGCTGTCAGGGTGCACCACAAATGGATGGTTGTCTCCAACAACAAAGAGCACTTTGAGATGATATTCATAGACAAAGAGGGGGATGATATACATGCTGTGGTGACAACAACCCATATGGCTGCGTTCTATGACAAAATAGCACAGGACCATACTTACACGGTGTCGAACTTCAAAGTTCAGCCAAATGTGTCGACTTTCAAACCATCGTCGCACAAGTTTATGGTGAAGTTTACCGGAGGAACATCCGTTGGTGATGACGATAAACACGAAATACCACCCAAACCACTGAAATTTACAAGTTTTTCTGATATCATCACTGGCAGGTTTAAAAAAGATGTACTGATAGACATCATAGGAATGGTGGATAGCATTGGATTTTCGGTGGCACAATCAGGGGCTAAAAAACAACAAGTTAATTTAGTGCTACGTGACCACAGCAACAACACCTTGAACTGCACTCTTTGGGAGTCCTATGCTGACCAATTCATCAAGTTCAATCAGGATCGGGTGAATGCGTCTGCACCAACTGTGGTCCTGCTTCAATATGCAAAAGTCAAGGAAGAGGGGAAGTTTCCACTGTCCGTCACAAACACTTACAACGTTACGATGCTCTACCTGGATGCTGATTTTCTTCCAATCAAAGAGTTTATAGACAACATCCCTAAAGATTTGGTGGTTAGTGTGTCTGGACAACTAAGTTGTAATTCTCAGCTTACCTCACAAGGCTCCGAAAATACTCAACAAACTCCTGTTCAGAAGTTACTATCTAAGGCCGTTGTTATGCCTCTCACTGAGATTACCAAACTTACTGACATCACATTTTGCGCTACTGTTGCCGAAACTAAAATTTTAGTAGCATCTCCATTTGGCTGGTATTATCGAGCCTGTCATTTATGCCCAAGGGTTGCACGCGGTGACAAACCTCCATTTCTTTGTGAAGCTGGTCATTCCACCGAAGCTGAGATATTTAGGTATAAGATAGAAATTGAAGTTTGCTACTCAGGGAAAAGTTGTAACTTTGTTTTCTGGGACAGAGAATGTGCACAGATTTTGGATTTATCTGCTGCTCAGATGCGCGACACCATGATTCAGGCTGGAATTCATGATCCATTAGAATTTCCACTGGCACTCGATGCGATGTTGAATTTGGAGATGGCATTTAAAGTTAAGTGGCATCCGCGTTGGAAAAATTGCTCTGTTGTCATGATCCTAAGAGATGACCCCTTCATCAAACAACTTAAGGCCCCTTGGGAACTTCCCCTGCAGGCAGCTGGAAATGTCCCGTCTAAAACATCGGAGTTGCTGCAGATTAAAGAGAGTGTTGATGAGGCGAGGACTGAAGCCCCTGAAGAATGTGATTTGGTTACGGATCTTGAGATTACGTCGAAGCATAACCCTGATCCGATAACACCCACGTCTAAAAGACAGCTTCCAGATGGATCAAGTGAATCAACAACTTTTGAAGGATTGTCTGAAGGAGAACTCTCATCGAACAAGCTTAAGAAGATCATCAAAATGGAGAAGAAAGATTAG 1593 0.4294 MARPLERIADINDKKELWKVAVRVHHKWMVVSNNKEHFEMIFIDKEGDDIHAVVTTTHMAAFYDKIAQDHTYTVSNFKVQPNVSTFKPSSHKFMVKFTGGTSVGDDDKHEIPPKPLKFTSFSDIITGRFKKDVLIDIIGMVDSIGFSVAQSGAKKQQVNLVLRDHSNNTLNCTLWESYADQFIKFNQDRVNASAPTVVLLQYAKVKEEGKFPLSVTNTYNVTMLYLDADFLPIKEFIDNIPKDLVVSVSGQLSCNSQLTSQGSENTQQTPVQKLLSKAVVMPLTEITKLTDITFCATVAETKILVASPFGWYYRACHLCPRVARGDKPPFLCEAGHSTEAEIFRYKIEIEVCYSGKSCNFVFWDRECAQILDLSAAQMRDTMIQAGIHDPLEFPLALDAMLNLEMAFKVKWHPRWKNCSVVMILRDDPFIKQLKAPWELPLQAAGNVPSKTSELLQIKESVDEARTEAPEECDLVTDLEITSKHNPDPITPTSKRQLPDGSSESTTFEGLSEGELSSNKLKKIIKMEKKD 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05417 530 Gene3D - 110 244 IPR012340 -
Vivi5g05417 530 SUPERFAMILY Nucleic acid-binding proteins 116 241 IPR012340 -
Vivi5g05417 530 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi5g05417 530 SUPERFAMILY Nucleic acid-binding proteins 6 103 IPR012340 -
Vivi5g05417 530 SUPERFAMILY Nucleic acid-binding proteins 293 412 IPR012340 -
Vivi5g05417 530 MobiDBLite consensus disorder prediction 483 513 - -
Vivi5g05417 530 CDD RPA1_DBD_A_like 19 103 - -
Vivi5g05417 530 MobiDBLite consensus disorder prediction 480 513 - -
Vivi5g05417 530 Gene3D - 3 104 IPR012340 -
Vivi5g05417 530 Gene3D - 253 424 IPR012340 -
Vivi5g05417 530 CDD RPA1_DBD_B_like 136 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05417 Vivi-Chr5 157032435 157035467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05417 8 328 Core DNA Replication Machinery Family AT5G45400 21.386 6.54e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05417 - - vvo:131597795 688.723