Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05405 ATGGGCACACACGTGTATATATATGTTTGTGTTTTGGCTACCTTGATTACATTTATATTAATGGATATGGAACATCAACAACAAAAGACCAACGAAGGCAAACACAGAGAGAAACTCATGATGAAGAATAGGTCCAAGTTTATTGGAGTAAGACAAAGGGCTTCAGGGAAATGGGCAGCAGAGATAAAAGACACACAGAAGAACATTAGGATGTGGCTTGGTACTTATAAAACCGCTGAAGAAGCTGCTCGTGCTTATGATGAAGCTGCATGTCTCCTTAGAGGTTCAAACACTCGTACAAACTTCTCTACCAGTCATCCCATTCCTACCAATTCTCCTATATCTCTTAAACTCAAAAAGCTTCTTCATCGTAAATCCATCTCAAATCAAACTCAAACTCAAACTCAGTGTCAAAATCAGTCTACAATGATGTGTTCTTCTTTACAAGGTGCTCCTATTGATAATAGCATCATGGTACATGAAAAGGAAAACAACTCTTCATGGAGTAGTGAAGAGTCAAAGTCTTTGTTTTGGGTTCAGAACCAAGATCCTAATGGGGTAGATATGAATATGATAAACTGCGAATTGGGTATTTCACCAAATACATTAGAGTTTGATTATTCTTGGTCTTTTCCCCAACAAAGGATTAAGGAGTTAACAACATCAAAAGATGATATGAATGTCTATGGTTTGAATGATTGCTATGTGGAAGACACGTACGAAGCTTATGAATATGATGCCAATTATTCTCTTTCGCACTTTTTTTGTTTTACTTGA 777 0.3681 MGTHVYIYVCVLATLITFILMDMEHQQQKTNEGKHREKLMMKNRSKFIGVRQRASGKWAAEIKDTQKNIRMWLGTYKTAEEAARAYDEAACLLRGSNTRTNFSTSHPIPTNSPISLKLKKLLHRKSISNQTQTQTQCQNQSTMMCSSLQGAPIDNSIMVHEKENNSSWSSEESKSLFWVQNQDPNGVDMNMINCELGISPNTLEFDYSWSFPQQRIKELTTSKDDMNVYGLNDCYVEDTYEAYEYDANYSLSHFFCFT 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05405 258 SUPERFAMILY DNA-binding domain 45 105 IPR016177 GO:0003677
Vivi5g05405 258 CDD AP2 45 105 IPR001471 GO:0003700|GO:0006355
Vivi5g05405 258 ProSiteProfiles AP2/ERF domain profile. 46 103 IPR001471 GO:0003700|GO:0006355
Vivi5g05405 258 Pfam AP2 domain 45 95 IPR001471 GO:0003700|GO:0006355
Vivi5g05405 258 PRINTS Ethylene responsive element binding protein signature 69 85 IPR001471 GO:0003700|GO:0006355
Vivi5g05405 258 PRINTS Ethylene responsive element binding protein signature 47 58 IPR001471 GO:0003700|GO:0006355
Vivi5g05405 258 SMART rav1_2 46 109 IPR001471 GO:0003700|GO:0006355
Vivi5g05405 258 FunFam ethylene-responsive transcription factor RAP2-11 45 104 - -
Vivi5g05405 258 Gene3D AP2/ERF domain 45 105 IPR036955 GO:0003700|GO:0006355
Vivi5g05405 258 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05405 Vivi-Chr5 156908605 156910909 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05405 23 123 AP2-EREBP Transcription Factor Family AT5G19790 64.356 2.34e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi5g05405 AP2 8.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05405 K09286 - gmx:100803832 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05405 5 156908605 156910909 Vivi5g05405 5 156908605 156910909 ECH