Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05400 ATGGATTTTGTGAAGAAGTGTAAGAGAGTATTGAGAAGCAGCAAGAGCATGCATGCAGAGGAAAGTTGCAGCGGACGCTATTACAAATTATCTTCAGAGACAAGACACAAAAAGCAAAAAGACAGTCATAAGAAACCACCACATGGTTGTGTTTGTGTCTATGTTGGAGATGAGAGACAGAGATTCATAATCAAGATCACCATATTCAATCACCCTTTGTTCAAACAATTTTTAGAAGATGTTGAGAATGAATATGGATATGGAAAAGATGGTCCTCTTTGGCTTCCTTGCAACCTTGACATGTTTTGTAAAACACTTGTGGAGATACAAACTTCTTTTCGAAAGAGTGATAATATATCATAA 363 0.3636 MDFVKKCKRVLRSSKSMHAEESCSGRYYKLSSETRHKKQKDSHKKPPHGCVCVYVGDERQRFIIKITIFNHPLFKQFLEDVENEYGYGKDGPLWLPCNLDMFCKTLVEIQTSFRKSDNIS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05400 120 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 37 106 IPR003676 GO:0009733
Vivi5g05400 120 Pfam Auxin responsive protein 6 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05400 Vivi-Chr5 156658028 156658390 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05400 47 102 Calmodulin-binding Proteins AT4G34750 41.071 2.99e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05400 K14488 - vvo:131618933 139.428