Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05392 ATGGAATGCATATGCGATCGGTTTGGATTTTGGCTCAGAGTTTGTGTTGGCTTGATTTCTCTCTGGGGAGTTCAACGCTGTTGGTCTCTCAACGACGAAGGAATTGCTTTGTTGGAATTTCGGGTAAAAATAACTTATGATCCTTATGGTGCTCTGGGGAATTGGAATCCAAATGATTCCGATCCTTGCAAGTGGTCGGGTGTTCGATGTGTTGATGGTAAAGTGCAAACGCTGGACTTAAATGGACTATCATTGGAAGGGACATTAACTCCTCATCTTGGGAAACTTAATCACTTGAAATCTATTGTGTTACGCAAGAACAATTTTTCTGGTGCCATTCCGAAAGAACTTGGAGATCTAGACAATCTGGAGTTGTTGGATTTAAGGGAGAATAACTTGATTGGAAATATCCCCGCAGAAGCCGGGAGGATGCTGTTGAAACAATTGTTGGTTCATGACAATAAATTTGAAGGTAGCAATTCTCAAGCACTCGAGAACATGGGACTGCCTTCTAAATCACTAGTTATCGAGAACTATTCATCGCCCCTGGCAAATTTGTTTCAGTGCAAGAATAGAAAGTTTGCATACTGCGCGTGGTATAGAGATCTCAAGCAATGGAACAAGGCAGAGTTTTTGGCAGTTCCAATTAAAGGAGCACTTAAAAGATATCTCAATGTCATGGCTCTACCACTGTTCAAGCTAGGAAAGGCTACATCTCATGGTTATGCAGAGAATTACTGTGCCGGTCTTCCTAGTTCTGGCGAGTTGGAGATTGGCTCAAATTTATCAAATCTGATCAGTTCTGCACGTCGTAGGTTGCTTGATCAGTCCAGTAACCTCGCAGCTGCACCTTACAATGGACCCGTTATACAGATCAGTTATCTTCCAATTACCACAAGTAGTGGATCTTTCTCCGCTGTGCCAGATCCCAATAAGAAACAAAATCAGTCCCTTGCACCACTCAATTCATCTGCTGGTTCTCAAACAAGTGAACCAAATTCAGCTAATGGTGCTCCAAGAAAACTCTGGAAATATGTTATTATTATCTCTGGTGTCGTTATCTTGGTTATTTTTATTGCGATCTTGCTTTGCGTCTTGCGAAAACGAGCTGCAAAAGCTATAAAGCCCTGGAAGACAGGAATAAGTGGACAGTTGCAAAAGGCATTTGTAACAGGGGTCCCAAAGTTGAATCGATCAGAGTTGGAGACGGCATGTGAAGATTTCAGCAATATCATTAACACTTTTGAGAAGTGCACGGTATATAAAGGAACACTGTCCAGTGGAGTCGAGATTGCTGTTGATTCTACTATTGTTACTTCTACTGAGGATTGGTCAAAGAGCATGGAGATAGCCTACAGGAGAAAGATTGCTGCCCTATCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGTTACTGTGACGAAGACGAACCATTCACAAGGATGATGGTCTTTGAGTATGCTCCAAACGGAAGCTTATATGAGCATTTACATGTTAAGGATGTTGAACATCTCGATTGGAGTGCAAGGATGAGGGTTGTTATGGGCACAGCTTATTGTCTTCATTACATGCACCATGACCTGAACCCTCCGGTCTCTCATTCCAACCTTAACTCAGTTTCAATATTGTTAACAGATGACTTTGCTGCTAAGATTTCAGAGATCAGTTTTGGCACTAATAGATTTCCTACCAGCACAACTGGAGAGGACTCTAAGAAATCCGAGTTGCCTCCCCAACAAGGTCCTGAAACCGATGTCTATAACTTTGGAATACTGTTGCTCGAAATCATTTCTGGGAAACTACCTTATTCTGAAGAACAAGGACACCTTGTGAACTGGGCTTCCGAGTTTTTGAATGATAAGCGAAACATCGGCTGTTTGATCGATCCAACTCTCGAGTCGTTCAAAGACAACGAACTTGATGTGATATGTGAGGTGATAAAAGAATGTGTTCAATCTGATCAAAGGTTAAGGCCAACAATGAAGGAAATAATTTGCAAATTGAGGGAAGTGCTTAATGTATCGCCTGAGCAAGCAGTCCCGAGACTTTCTCCACTCTGGTGGGCCGAACTCGAAATCTTGTCAGTGGAGGCCACTTAA 2103 0.4218 MECICDRFGFWLRVCVGLISLWGVQRCWSLNDEGIALLEFRVKITYDPYGALGNWNPNDSDPCKWSGVRCVDGKVQTLDLNGLSLEGTLTPHLGKLNHLKSIVLRKNNFSGAIPKELGDLDNLELLDLRENNLIGNIPAEAGRMLLKQLLVHDNKFEGSNSQALENMGLPSKSLVIENYSSPLANLFQCKNRKFAYCAWYRDLKQWNKAEFLAVPIKGALKRYLNVMALPLFKLGKATSHGYAENYCAGLPSSGELEIGSNLSNLISSARRRLLDQSSNLAAAPYNGPVIQISYLPITTSSGSFSAVPDPNKKQNQSLAPLNSSAGSQTSEPNSANGAPRKLWKYVIIISGVVILVIFIAILLCVLRKRAAKAIKPWKTGISGQLQKAFVTGVPKLNRSELETACEDFSNIINTFEKCTVYKGTLSSGVEIAVDSTIVTSTEDWSKSMEIAYRRKIAALSRVNHKNFTNLIGYCDEDEPFTRMMVFEYAPNGSLYEHLHVKDVEHLDWSARMRVVMGTAYCLHYMHHDLNPPVSHSNLNSVSILLTDDFAAKISEISFGTNRFPTSTTGEDSKKSELPPQQGPETDVYNFGILLLEIISGKLPYSEEQGHLVNWASEFLNDKRNIGCLIDPTLESFKDNELDVICEVIKECVQSDQRLRPTMKEIICKLREVLNVSPEQAVPRLSPLWWAELEILSVEAT 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05392 700 MobiDBLite consensus disorder prediction 305 337 - -
Vivi5g05392 700 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Vivi5g05392 700 FunFam Nuclear pore complex protein NUP107 30 181 - -
Vivi5g05392 700 SUPERFAMILY L domain-like 36 167 - -
Vivi5g05392 700 SMART serkin_6 343 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05392 700 Gene3D Phosphorylase Kinase; domain 1 382 488 - -
Vivi5g05392 700 PANTHER PROTEIN MALE DISCOVERER 2 18 698 - -
Vivi5g05392 700 MobiDBLite consensus disorder prediction 305 336 - -
Vivi5g05392 700 ProSiteProfiles Protein kinase domain profile. 406 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05392 700 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Vivi5g05392 700 Pfam Protein tyrosine and serine/threonine kinase 418 669 IPR001245 GO:0004672|GO:0006468
Vivi5g05392 700 Gene3D Transferase(Phosphotransferase) domain 1 489 681 - -
Vivi5g05392 700 FunFam Inactive receptor-like serine/threonine-protein kinase 380 488 - -
Vivi5g05392 700 MobiDBLite consensus disorder prediction 562 579 - -
Vivi5g05392 700 MobiDBLite consensus disorder prediction 562 584 - -
Vivi5g05392 700 SUPERFAMILY Protein kinase-like (PK-like) 393 669 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05392 Vivi-Chr5 156415515 156420113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05392 85 672 Receptor kinase-like Gene Family AT5G56040 27.962 4.61e-47 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Vivi5g05392 PK_Tyr_Ser-Thr 9.2e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05392 - - gmx:100808098 984.171