Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05391 ATGTCAGATGGAAATGAGAATGAGAAAAGTGGGAAGAGTACTAATGAGGAAAATGTTGGTTGTGAGGATACTTCAATGGGATCTTCACAGCTTAACTTTGATTTGAATGAAGAAGCTAGTAGTGATCAAGATGATATTAATTATATTGAGAATGAGAATGATGAAGCGAATGGCGATGACGACGATGATGGTGGTGATGAGAAAGCAAAGGATGATGATGATGATGATGGAAGTTCAAGTTCAACAAAAGTTAGAAGTAGTGGATCAAATGAAAGAAGAAATGGTGTAAGACAATATGTTAGATCAAAGATGCCTAGGCTTAGGTGGACTCCTGATCTTCATCATTCATTTGTGCATGCTGTTGAAAGACTTGGAGGCCAAGAGAGAGCAACACCTAAATTGGTACTTCAACTAATGAATGTGAGAGGACTCAGCATTGCTCATGTCAAGAGTCATTTGCAGATGTACCGGAGCAAGAAACTTGATGATGTTGGACAAGTATTAAGTCCAACACACAGATTAACACATGAACTAGGTCATGTAGCTCATCACTCCATGATGCCTCATCAACATTTCAAGATGGCAAATGGTGGAATTGTTCTAGAAACCAATTACAACCAGCACAATTATAATTTTCACACTCTCTTGCATTCACATTCAAAAGCCATCAATTCAAGGAACCAACAATGGTACTTAAATCATCAATCTTTAAGACCAAGCTATGTGAGCAATGAAGTTGTCTCTTCAACCGCTTTACATGGAAGATCGTCGATAGCTCCGAACCAGCAGATTACTCAAGTTATGGATACTAGTTTGAATACCACACTTGCTCCAATGAGACCAAGCCAATTTCTTGAAGAGAAAAGGTGGCCTCCATTAGATATCATGAGCAATAATCAATATTGGAAGAAAAATTTACATACTAATGTTTCCACTTTTGGCTCCACTACAACAACATCACTTAGACCAGTTGAAGTGAGCTTTGGAAACAACACAAGGATCAGAGAAAATCTATTAAAACTCAATGAGTATCATAGTTCATCAAAGGTTGAATTCGATTCGCCATTCCGGATTAAGATGAATCAAGAAAAATTGCAAAAAGAGAAAAAATGGTTGCCTGATTTGCAACTGAGTTTAAGCCAAACAAATGGCAACAGTGATGATAAGAGTGATGGTTTGAGAGAAAATAAAGAAATCAACACAAAACTCTCACTTTCTTAG 1221 0.3726 MSDGNENEKSGKSTNEENVGCEDTSMGSSQLNFDLNEEASSDQDDINYIENENDEANGDDDDDGGDEKAKDDDDDDGSSSSTKVRSSGSNERRNGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDDVGQVLSPTHRLTHELGHVAHHSMMPHQHFKMANGGIVLETNYNQHNYNFHTLLHSHSKAINSRNQQWYLNHQSLRPSYVSNEVVSSTALHGRSSIAPNQQITQVMDTSLNTTLAPMRPSQFLEEKRWPPLDIMSNNQYWKKNLHTNVSTFGSTTTTSLRPVEVSFGNNTRIRENLLKLNEYHSSSKVEFDSPFRIKMNQEKLQKEKKWLPDLQLSLSQTNGNSDDKSDGLRENKEINTKLSLS 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05391 406 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 161 IPR017930 -
Vivi5g05391 406 MobiDBLite consensus disorder prediction 81 95 - -
Vivi5g05391 406 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 84 234 IPR046955 GO:0003700
Vivi5g05391 406 Gene3D - 104 161 - -
Vivi5g05391 406 MobiDBLite consensus disorder prediction 17 37 - -
Vivi5g05391 406 FunFam Myb family transcription factor 103 161 - -
Vivi5g05391 406 Pfam Myb-like DNA-binding domain 107 157 IPR001005 -
Vivi5g05391 406 SUPERFAMILY Homeodomain-like 103 159 IPR009057 -
Vivi5g05391 406 MobiDBLite consensus disorder prediction 1 16 - -
Vivi5g05391 406 NCBIfam myb-like DNA-binding domain, SHAQKYF class 105 160 IPR006447 GO:0003677
Vivi5g05391 406 MobiDBLite consensus disorder prediction 376 406 - -
Vivi5g05391 406 MobiDBLite consensus disorder prediction 38 73 - -
Vivi5g05391 406 MobiDBLite consensus disorder prediction 1 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05391 Vivi-Chr5 156386965 156391215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05391 94 162 G2-like Transcription Factor Family AT2G42660 81.159 3.96e-34 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vivi5g05391 Myb_DNA-binding 7.5e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05391 - - mtr:11419043 538.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05391 5 156386965 156391215 Vivi5g05391 5 156386965 156391215 ECH
Vivi5g05390 5 156386963 156390842 Vivi5g05391 5 156386965 156391215 ECH
Vivi5g05391 5 156386965 156391215 Vivi5g05390 5 156386963 156390842 PCT