Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05387 ATGAAACTCTTTTACAGATTCTTGATTCTTCTAGCCATATTTTCTTTAGCAGAATCTTCATGCAACACTGAAGACCAAACCTTAATTTCAAAGGCTTTCAAATCCGTCTCTGGCTTCAACTCTTCAACTTTATTCCAAACAATAACCTCCTCCAACTGTTCAAATTCCCATATCACTAAAATCATTCTTCCCTCCAAAAATCTAACCGGAACAATTTCATGGGCTTACCTCAAAAACATGTCAAACTTACAAATTCTTGACCTCTCTGGAAATTCCCTACAAGGCCACATACCAAGCTGGTTTTGGTCTAGCTTTTCATCTTTAGTAGAAATAAACCTCTCAAGAAACAAATTCGGAGGAAGCGTCACCGTTGAGTTGAATAACACATCAACAATTGAAAACCTCAATCTCTCACACAATAGGTTCAGTAATTTAGTTCAACTTTCCACCTTCCAGAACCTTAAAATCCTCGACCTTTCCCACAACAACCTGAGAACACTTCCTTTCGGTTTCGAAAACCTAACCAAACTACAACACCTCGACCTTTCAAGCTGCAATCTCAGAGATAACATAAAATCAATCTCTTCTTTAAACTCACTTCATTACCTAGACTTATCAAACAACAATTTAACCGGAACTTTCCCTTCCGATTTTCCGGTAATCAACAATCTCAAATTCCTCAACATTTCAAACAACAACTTCACCTTTAACAAACCAAACCAAAATCCAAAACAACTCATCATCTTTCATACAAAACAAACCAAACCAAAAACCAAAAGATTGATACTTGCAGTGTGTTCTACACTATCCACACTTGTTATAGCTCTTCTTTTCATTTGGGCTATCCGTATAATTCACAGAAAGAGGAAACAACGTTCTAAGAAGAAGAAATGGGCTATCTCGATACCGAACACGATGAACACGAAGTTGGACAAAACAGGGCCGTTTGAGTTTGAAACAGAGTCAGGCTCAACATGGGTTGCAGATGTGAAAGAACCAACATCTGCAGCAGTGGTGATGTTCGAGAAGCCATTGATGAACTTGACCTTCAAGGATCTCATCATTGCAACATCACATTTCGGGAAAGAGTCGCAGCTGGCAGAAGGAAGATGTGGGCCAGTGTATTGGGCCGTGTTACCCGGGGAAATCCATGTGGCGATCAAGGTTCTTGAGCATGTCAGAGACGTTGATTATGATGAGTCTGTTGCTATGTTTGTTGAGTTGTCGAAGGTGAAGCATCCCAACTTGTTGACTCTCTCAGGTTACTGTATTGCAGGTAAGGAGAAGCTAGTGTTATATGAGTTTATGGCCAACGGCAATTTAGGTCGATGGCTACACGAGCTTCCAACTGGCGATACCAACATCGAGGATTGGACTGACGACACATGGGAGTTCCAAAACGGCATTGTCGAAGCATCACCCGAAAAGATGGGGTGGCGGATACGCCACCGTATCGCAGTGGGGATAGCGCGTGGCCTCGCGTTTCTCCATCATGCAGGTTCAAAGCCTATTGTGCACGGCCACCTCGTCACCTCCAACATTTTACTCACTGATAATTTCGAGCCACGAATCTCCGATTTTGGATTGCGAATTGACTCGAGTCCCAATGGCGGCACTGAGGTTGATGTGTATTGCTTTGGAGTCGTGTTGGTGGAACTTCTAATTGGAAAAATCGTCACAACGGAGGTAATTGTGGCGGTTAGAAATGCGGCGAAGGAAGGACAACATGTTAAAGTGCTTGATGAGAGATTGCAACTTGAAGATGATTCAATGGTGAATGAGATGTTGGAGAGCCTCATGATTGCTTTCTTGTGCATGGCTGAGTCGCCTTCCAAGAGACCAACCATGCAACAAGTTTTGGGCTTACTCAAAGATGTTCGTCCTCATGAACCTATGGTTTTAAATTGA 1908 0.423 MKLFYRFLILLAIFSLAESSCNTEDQTLISKAFKSVSGFNSSTLFQTITSSNCSNSHITKIILPSKNLTGTISWAYLKNMSNLQILDLSGNSLQGHIPSWFWSSFSSLVEINLSRNKFGGSVTVELNNTSTIENLNLSHNRFSNLVQLSTFQNLKILDLSHNNLRTLPFGFENLTKLQHLDLSSCNLRDNIKSISSLNSLHYLDLSNNNLTGTFPSDFPVINNLKFLNISNNNFTFNKPNQNPKQLIIFHTKQTKPKTKRLILAVCSTLSTLVIALLFIWAIRIIHRKRKQRSKKKKWAISIPNTMNTKLDKTGPFEFETESGSTWVADVKEPTSAAVVMFEKPLMNLTFKDLIIATSHFGKESQLAEGRCGPVYWAVLPGEIHVAIKVLEHVRDVDYDESVAMFVELSKVKHPNLLTLSGYCIAGKEKLVLYEFMANGNLGRWLHELPTGDTNIEDWTDDTWEFQNGIVEASPEKMGWRIRHRIAVGIARGLAFLHHAGSKPIVHGHLVTSNILLTDNFEPRISDFGLRIDSSPNGGTEVDVYCFGVVLVELLIGKIVTTEVIVAVRNAAKEGQHVKVLDERLQLEDDSMVNEMLESLMIAFLCMAESPSKRPTMQQVLGLLKDVRPHEPMVLN 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05387 635 FunFam Calmodulin-binding receptor kinase CaMRLK 130 239 - -
Vivi5g05387 635 Pfam Protein tyrosine and serine/threonine kinase 363 532 IPR001245 GO:0004672|GO:0006468
Vivi5g05387 635 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 41 625 - -
Vivi5g05387 635 SMART LRR_typ_2 80 104 IPR003591 -
Vivi5g05387 635 SMART LRR_typ_2 151 173 IPR003591 -
Vivi5g05387 635 SMART LRR_typ_2 197 216 IPR003591 -
Vivi5g05387 635 ProSiteProfiles Protein kinase domain profile. 360 632 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05387 635 Gene3D Phosphorylase Kinase; domain 1 320 435 - -
Vivi5g05387 635 Pfam Leucine Rich Repeat 199 218 IPR001611 GO:0005515
Vivi5g05387 635 Pfam Leucine rich repeat 57 118 IPR001611 GO:0005515
Vivi5g05387 635 Pfam Leucine rich repeat 131 187 IPR001611 GO:0005515
Vivi5g05387 635 PRINTS Leucine-rich repeat signature 154 167 - -
Vivi5g05387 635 PRINTS Leucine-rich repeat signature 197 210 - -
Vivi5g05387 635 Gene3D Ribonuclease Inhibitor 25 128 IPR032675 -
Vivi5g05387 635 Gene3D Ribonuclease Inhibitor 129 277 IPR032675 -
Vivi5g05387 635 Gene3D Transferase(Phosphotransferase) domain 1 536 632 - -
Vivi5g05387 635 FunFam Putative LRR receptor-like serine/threonine-protein kinase 321 435 - -
Vivi5g05387 635 SUPERFAMILY Protein kinase-like (PK-like) 335 621 IPR011009 -
Vivi5g05387 635 ProSiteProfiles Leucine-rich repeat profile. 153 175 IPR001611 GO:0005515
Vivi5g05387 635 SUPERFAMILY L domain-like 45 239 - -
Vivi5g05387 635 Gene3D Transferase(Phosphotransferase) domain 1 436 535 - -
Vivi5g05387 635 ProSiteProfiles Leucine-rich repeat profile. 131 152 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05387 Vivi-Chr5 156334338 156337423 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05387 58 626 Receptor kinase-like Gene Family AT5G07280 31.898 3.21e-76 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Vivi5g05387 PK_Tyr_Ser-Thr 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05387 - - gmx:100788556 840.876