Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05384 ATGGATCAGGCAACAAGCAAAGGTAGTGGTGAAATGTTGGATCATGTTGTTAATAAAGGGGTTAATGAGAATTCGAGTTGTTTAGTTGAAGGAGTTGCAACTGATGCAGGAGCTGGACATAGCTTGGGTGGTAGGGTTAGTGTATGCGGTGAAGATCGGAATTCAGAAGAGTTGTGCAATGATCTTGGATTGAATGAGGAGCTAAAGGAGGGACAGCCTTTAGAAGTTAAGGATTGCAATCCAAACTTTGGTGGTGATCCTGGAAAAATCAACAATGAATTACGCGGGTTTGATCAAGGGACTAGTTATAATTCAAGTGATTCAGTTAATGGGGAAGCACTTGAGACCCGTGTTGTAATAGATTCTTCTGCTCAGGTTGAGTCTGTCGATGGAGATAACAGAAAATTAGAAGCTAAGACTAATGAATCAAGGTTGAACAAGCTATTGGTTAAAGCACGGAAAGGTGTGTCTGAGACTGATAAAAATTCGTGTGTGATTGATGTGAATTGTGGCAGCGGCAAAGATTTTAGTGAGAATTTGGATGGTGAAACGATTTGTAGGATTTGCCATCTTGCATCTGGCCAACCATTAGAAGAAACTGCTGTTGGAACTCCAAATAGTAGTGTTGATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTCGGAATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATCTGCGGTGAGACTGCAAAGAATGTTCCCGATGTTATTAACAATGCATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGATAGTGGTAGCACCAGCACTTCACCGCGCGGGCTGGTTGGATGCTGGCGCGGGCAACCATTCTGCAACTTCCTAATGGCATGCCTGGTAATAGGTTTTGTTCTACCATGGTTCTTTCGTGTAAAAATGTTCTAG 957 0.4211 MDQATSKGSGEMLDHVVNKGVNENSSCLVEGVATDAGAGHSLGGRVSVCGEDRNSEELCNDLGLNEELKEGQPLEVKDCNPNFGGDPGKINNELRGFDQGTSYNSSDSVNGEALETRVVIDSSAQVESVDGDNRKLEAKTNESRLNKLLVKARKGVSETDKNSCVIDVNCGSGKDFSENLDGETICRICHLASGQPLEETAVGTPNSSVDDKTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVPDVINNAFMEEWCESGFIDSGSTSTSPRGLVGCWRGQPFCNFLMACLVIGFVLPWFFRVKMF 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05384 318 Pfam RING-variant domain 208 249 IPR011016 GO:0008270
Vivi5g05384 318 ProSiteProfiles Zinc finger RING-CH-type profile. 178 256 IPR011016 GO:0008270
Vivi5g05384 318 PANTHER ZINC FINGER, RING-CH-TYPE 77 318 - -
Vivi5g05384 318 SUPERFAMILY RING/U-box 183 252 - -
Vivi5g05384 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 258 IPR013083 -
Vivi5g05384 318 SMART ringv_2 185 250 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05384 Vivi-Chr5 156211423 156213370 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05384 114 314 C3H Transcription Factor Family AT5G05830 35.749 1.03e-26 102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05384 5 156211423 156213370 Vivi5g05384 5 156211423 156213370 ECH
Vivi5g05384 5 156211423 156213370 Vivi5g05383 5 156211423 156213370 PCT