Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05382 ATGTTGGATCATGTTGTTAATAAAGGGGTTAATGAGAATTCGAGTTGTTTAGTTGAAGGAGTTGCAACTGATGCAGGAGCTGGACATAGCTTGGGTGGTAGGGTTAGTGTATGCGGTGAAGATCGGAATTCAGAAGAGTTGTGCAATGATCTTGGATTGAATGAGGAGCTAAAGGAGGGACAGCCTTTAGAAGTTAAGGATTGCAATCCAAACTTTGGTGGTGATCCTGGAAAAATCAACAATGAATTACGCGGGTTTGATCAAGGGACTAGTTATAATTCAAGTGATTCAGTTAATGGGGAAGCACTTGAGACCCGTGTTGTAATAGATTCTTCTGCTCAGGTTGAGTCTGTCGATGGAGATAACAGAAAATTAGAAGCTAAGACTAATGAATCAAGGTTGAACAAGCTATTGGTTAAAGCACGGAAAGGTGTGTCTGAGACTGATAAAAATTCGTGTGTGATTGATGTGAATTGTGGCAGCGGCAAAGATTTTAGTGAGAATTTGGATGGTGAAACGATTTGTAGGATTTGCCATCTTGCATCTGGCCAACCATTAGAAGAAACTGCTGTTGGAACTCCAAATAGTAGTGTTGATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTCGGAATTGCACACAGTCATTGTGCTGAGGCATGGTTCAAGATTAAAGGAAACAGGTTGTGCGAAATCTGCGGTGAGACTGCAAAGAATGTTCCCGATGTTATTAACAATGCATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGATAGTGGTAGCACCAGCACTTCACCGCGCGGGCTGGTTGGATGCTGGCGCGGGCAACCATTCTGCAACTTCCTAATGGCATGCCTGGTAATAGGTTTTGTTCTACCATGGTTCTTTCGTGTAAAAATGTTCTAG 924 0.4199 MLDHVVNKGVNENSSCLVEGVATDAGAGHSLGGRVSVCGEDRNSEELCNDLGLNEELKEGQPLEVKDCNPNFGGDPGKINNELRGFDQGTSYNSSDSVNGEALETRVVIDSSAQVESVDGDNRKLEAKTNESRLNKLLVKARKGVSETDKNSCVIDVNCGSGKDFSENLDGETICRICHLASGQPLEETAVGTPNSSVDDKTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNVPDVINNAFMEEWCESGFIDSGSTSTSPRGLVGCWRGQPFCNFLMACLVIGFVLPWFFRVKMF 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05382 307 PANTHER ZINC FINGER, RING-CH-TYPE 66 307 - -
Vivi5g05382 307 Pfam RING-variant domain 197 238 IPR011016 GO:0008270
Vivi5g05382 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 247 IPR013083 -
Vivi5g05382 307 ProSiteProfiles Zinc finger RING-CH-type profile. 167 245 IPR011016 GO:0008270
Vivi5g05382 307 SMART ringv_2 174 239 IPR011016 GO:0008270
Vivi5g05382 307 SUPERFAMILY RING/U-box 172 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05382 Vivi-Chr5 156211423 156213383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05382 103 303 C3H Transcription Factor Family AT5G05830 35.749 7.82e-27 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05382 - - gmx:100791129 398.282