Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05365 ATGAAAAGTAAATTCAAAAACCCATATACACCTCAAGAAGAAGACACTTACATGTCTCAAGATTCCCCTCCTTCTTCCACCACATTCAACATCGATGGCTCTATCACTTCCATCTCTTCACCATCTAAGAAAAGCAGAAGAGCCATACAGAAAAGGGTGCTGCAAATCCCAATCAAGGAACCTCAAGGATCAAGGCTAAAAGGAGAGAGTAATACCCCACCTTCTGATTCATGGGCATGGAGAAAATACGGCCAGAAACCCATCAAAGGTTCTCCTTATCCAAGAGCGTACTACAGATGTAGCAGTTGCAAAGGTTGTCCAGCAAGGAAACAAGTCGAGAGAAGCCGCGTGGACCCCACAATGCTCGTCATAACTTACTCCTCCGACCACAACCACCCATGGCCGGTTTCAAGAAACATAACAAAACTCTCCGTCAAGAAAACCGAACCAGACCCGGTCGAACCGGAGGAGAAATTTTCTGGCACCTTGGTTGACGACGAGTTGGGGTGGTTGGGAGAGATGGATACGACGTCGTCAGCTCTTCTGGAGAGTTCTATCATGGCGGAATTCGATGCTGACATGGAGTCGTTAATGTTGCCGATGGGGGAAGAAGATGAGTTGCTTTTTGCTGACCTTGGTGAGTTGCCGGAGTGTTCGACGGTTTTCCGGCATGGGTTGTTGGATGGACGGCGGCGGTTAACGGCTCCGTAA 711 0.4838 MKSKFKNPYTPQEEDTYMSQDSPPSSTTFNIDGSITSISSPSKKSRRAIQKRVLQIPIKEPQGSRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSCKGCPARKQVERSRVDPTMLVITYSSDHNHPWPVSRNITKLSVKKTEPDPVEPEEKFSGTLVDDELGWLGEMDTTSSALLESSIMAEFDADMESLMLPMGEEDELLFADLGELPECSTVFRHGLLDGRRRLTAP 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05365 236 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g05365 236 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g05365 236 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vivi5g05365 236 MobiDBLite consensus disorder prediction 10 44 - -
Vivi5g05365 236 Gene3D WRKY domain 64 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vivi5g05365 236 MobiDBLite consensus disorder prediction 1 82 - -
Vivi5g05365 236 FunFam WRKY transcription factor 65 58 135 - -
Vivi5g05365 236 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 12 220 IPR044810 GO:0003700
Vivi5g05365 236 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05365 Vivi-Chr5 155861613 155863380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05365 24 224 WRKY Transcription Factor Family AT1G29280 56.444 1.36e-75 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vivi5g05365 WRKY 7.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05365 - - vvo:131607890 477.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05365 5 155861613 155863380 Vivi5g05365 5 155861613 155863380 ECH