Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05364 ATGGGAGGAAGAGGAGGAGTGTGCAAAGCATGGGAGGAAGACATTTATTGGACACACTTTCAATTCATCCATTTCACTCGATTTCTCCGCTCTGATTTTGATCAACAACTTGAACTTCCCAAAACATTTTCTGACAATATAAAGAAGAACTTGCCCGAAAGTGTGACCCTAAAAGGTCCTGGTGGAATGCTGTGGAATATAGAGCTGACAACTAGAGACAATACCTTGTACTTGACGCACGGTTGGCAACAATTTGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAACCTTTGATGGCGAGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTCAACATGCAGTCAATACTGAACAAGGGGGCGGATGTTCTAGCCCGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCCAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATGTACCTATTGAAGCTACCAATGGCAAGACTTCTAATGTTGGTGTTGAATCAGCTTCCGCCGAGCAATTCATGTCTGACGTAATTACTGATACTGAGCCAAAAACTGCTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGCCATCAAAAACTCCTTCTAACGGTGTTGATGAATGTGTTTCACCTGAGAAATCTTCGCATCTTAACAGTATCCGAGTGCCACTTGATATACCTCTTGAAACTACTAATGGCAAGACTTCCAATGCTGATGTTGAATCTGCTTCTGCTGAGCAATTCATGTCTGATGCAGTCACTCATACAGAGCCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGGGCAAGGAGGCTTGTTTATGCCGATACGTCTGTCCCCAATAAGAAGAGAGGAAGACCGACAAAAACCACTAATTCTCACAAGAGAGCTCTTAATTGTGATTCTGGGGCTGAACTTTCTCCCAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTGGATCTGGGACGCAGGAACTATATACTTCAAATAGAAGGCCTGTCACCAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGAAGACACCTTGCTTGTAACCATGCGACCTACGCATGTATACAAGAAATTCTTCGTGTCATTCCCTAATAAGTGGAGAATAAACCATCTTTCTTCGTCATCTCAAAATGTGATATTACGCATGGGTAAGATTGAATGGCTTGGGAAGTACCGCTACCATAAGACTCGTAGCAATGGAGGACTTACAGGTGGATGGAAACATTTTGCGCTCGAAAATAACCTTGAAGAGTTTGATGTGTGTTTGTTTAAGCCCGCTGGTCATATGGACAAGACTTTGATCTTAGAAATGACCATTTTTAGAGTTGTTGAGGAGATTACTCCTCTTACTGCGGTGAATTCTCCGGGAAAGAAGAGGTCAATTAAGAAAACACCAACCGGTGTGAATTCTCCGGGAAAGAAGTCAGTTAAGAAAACACCAACCGGGGTGAATTCTCCGAAAAAGAAGAGGTCTATTAAGAAAACACCAGTCAGGGTAAATTCTCCGGAAAAGAAGAGGTCAATTAAGAAAACACGAAGCGGTGCTGTCCAAACAGAACTTGAGTCCTTTGAACCACTAGTAAAGAAGAGGGGAGTTAACATAACATTGACCAGTGCTGTCCAAACAGAAATTGACTCCATTGAAGGTGCGTAG 1779 0.4244 MGGRGGVCKAWEEDIYWTHFQFIHFTRFLRSDFDQQLELPKTFSDNIKKNLPESVTLKGPGGMLWNIELTTRDNTLYLTHGWQQFVKEHSLKENDFLVFKYNGESLFEVLTFDGESLCEKAACYFVRKCQHAVNTEQGGGCSSPKRDSDNSVEEVKTPNGVDEGVSPEKSLHLNSIRVPLDVPIEATNGKTSNVGVESASAEQFMSDVITDTEPKTAPSQTTGKRTRRPSKTPSNGVDECVSPEKSSHLNSIRVPLDIPLETTNGKTSNADVESASAEQFMSDAVTHTEPKTVPSQTTGKRARRLVYADTSVPNKKRGRPTKTTNSHKRALNCDSGAELSPKVSPKASPKVGSGTQELYTSNRRPVTKNEIENTLQLAQATCAEDTLLVTMRPTHVYKKFFVSFPNKWRINHLSSSSQNVILRMGKIEWLGKYRYHKTRSNGGLTGGWKHFALENNLEEFDVCLFKPAGHMDKTLILEMTIFRVVEEITPLTAVNSPGKKRSIKKTPTGVNSPGKKSVKKTPTGVNSPKKKRSIKKTPVRVNSPEKKRSIKKTRSGAVQTELESFEPLVKKRGVNITLTSAVQTEIDSIEGA 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05364 592 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 29 489 IPR044837 -
Vivi5g05364 592 MobiDBLite consensus disorder prediction 311 357 - -
Vivi5g05364 592 MobiDBLite consensus disorder prediction 134 170 - -
Vivi5g05364 592 SUPERFAMILY DNA-binding pseudobarrel domain 21 113 IPR015300 -
Vivi5g05364 592 MobiDBLite consensus disorder prediction 495 558 - -
Vivi5g05364 592 CDD B3_DNA 390 483 IPR003340 GO:0003677
Vivi5g05364 592 Pfam B3 DNA binding domain 35 110 IPR003340 GO:0003677
Vivi5g05364 592 Pfam B3 DNA binding domain 389 477 IPR003340 GO:0003677
Vivi5g05364 592 MobiDBLite consensus disorder prediction 206 248 - -
Vivi5g05364 592 ProSiteProfiles B3 DNA-binding domain profile. 387 485 IPR003340 GO:0003677
Vivi5g05364 592 CDD B3_DNA 25 113 IPR003340 GO:0003677
Vivi5g05364 592 MobiDBLite consensus disorder prediction 538 554 - -
Vivi5g05364 592 SUPERFAMILY DNA-binding pseudobarrel domain 388 475 IPR015300 -
Vivi5g05364 592 MobiDBLite consensus disorder prediction 495 524 - -
Vivi5g05364 592 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Vivi5g05364 592 Gene3D - 19 118 IPR015300 -
Vivi5g05364 592 SMART B3_2 387 485 IPR003340 GO:0003677
Vivi5g05364 592 SMART B3_2 25 115 IPR003340 GO:0003677
Vivi5g05364 592 Gene3D - 366 487 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05364 Vivi-Chr5 155851945 155854989 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05364 332 483 REM Transcription Factor Family AT4G33280 29.762 6.09e-21 93.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g05364 B3 4.5e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05364 - - psat:127106368 876.315