Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05363 ATGGGTGGAAGAAGAGGAGTGTGCACAGCATGGGAGGAAGACATTTACTGGACACATTTTCAGTTTATCCATTTCACCCAATTTCTCCGCTCTGATTTTGATCAACAACTTGCAATTCCCAAAACATTTTCTGACAATATAAAGAAAAACTTGCCTGAAAGTGTGACCCTAAAAGGACCTGGTGGAGTGCTGTGGAATATAGAGTTGACAACTAGAGACCATACCTTGTACTTCACGCGCGGTTGGCAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTGATGGCAAGAGTTTATGTGAGAAAGCAGCTTGTTATTTTGTTCGAAAATGTCAGCATGCCGCCTATAAGGAACAGGGGGGTGGATGGTCTAACAAGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGCTGTGCCTATCGAAACTACTAATGGCAAGACTTCTAATGCTGGTATTGAATCTGCTTCCGCCGCCGAGCAATTCATGTCTGATGCAGTCACTGACACCGAGCCAAAAACTGGTCCCTTCCAAACAACGGGTAAACGGACGAGGAGGCCACCAAAAACTGTTTATGCCGATACACCTGTCCCTATCAAAAAGAGAGGAAGACCATCAAAAACCGCTAATTCTCACGAAAGAGCTCGTAATTGTGTGTCTGGTGCTGAACTCTCTCCCAAGGTTTCTCCAAAGGTTGGATCTGGAACCAAGGAACTATATACTTCAAATAGAAGGCCTGTCACAAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGCAGACACGTTACTTGTAACCATGCGACCCACGCATGTATACAAGAAATTCTTCGTGTCATTCCCTAACAAGTGGATAATAAACCATCTTTCTCCGTCATCTCAAGAAGTGATATTACGCATGGGTGAGAGTGAATGGCTTGGGAAATACTTCTATTATAATATTCGTAACAGTGGAGGACTTACCGGTGGGTGGAAATATTTTGCGCTAGAAAATAATCTTGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGCTGGTTATATGGACAAAACTTTGATCTTAGACATTACCATTTTTAGAGTAGTTGAGGAGATTACTCCTCTCACTGCTGTGAATTCACCTGGAAAGAAGAGGTCAAGTAAGAAAACACCAACCGAGGTGAAATCTCAGGGAAAGAGGAGGTCAATTAAGAAAACACGAACCGGTGCTGTCCAAACAGAACTCGAGTCCGTTGAACCACTTACCAGTGCTGTCTAA 1398 0.422 MGGRRGVCTAWEEDIYWTHFQFIHFTQFLRSDFDQQLAIPKTFSDNIKKNLPESVTLKGPGGVLWNIELTTRDHTLYFTRGWQQFVKEHSLKENDFLVFKYNGESLFEVLIFDGKSLCEKAACYFVRKCQHAAYKEQGGGWSNKKRDSDNSVEEVKTPNGVDEGVSPEKSLHLNSIRVPLAVPIETTNGKTSNAGIESASAAEQFMSDAVTDTEPKTGPFQTTGKRTRRPPKTVYADTPVPIKKRGRPSKTANSHERARNCVSGAELSPKVSPKVGSGTKELYTSNRRPVTKNEIENTLQLAQATCAADTLLVTMRPTHVYKKFFVSFPNKWIINHLSPSSQEVILRMGESEWLGKYFYYNIRNSGGLTGGWKYFALENNLEEFDVCLFKPAGYMDKTLILDITIFRVVEEITPLTAVNSPGKKRSSKKTPTEVKSQGKRRSIKKTRTGAVQTELESVEPLTSAV 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05363 465 SUPERFAMILY DNA-binding pseudobarrel domain 312 399 IPR015300 -
Vivi5g05363 465 Pfam B3 DNA binding domain 313 402 IPR003340 GO:0003677
Vivi5g05363 465 Pfam B3 DNA binding domain 34 113 IPR003340 GO:0003677
Vivi5g05363 465 MobiDBLite consensus disorder prediction 448 465 - -
Vivi5g05363 465 Gene3D - 290 411 IPR015300 -
Vivi5g05363 465 SMART B3_2 311 409 IPR003340 GO:0003677
Vivi5g05363 465 SMART B3_2 25 115 IPR003340 GO:0003677
Vivi5g05363 465 MobiDBLite consensus disorder prediction 211 228 - -
Vivi5g05363 465 MobiDBLite consensus disorder prediction 418 465 - -
Vivi5g05363 465 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 412 IPR044837 -
Vivi5g05363 465 CDD B3_DNA 314 407 IPR003340 GO:0003677
Vivi5g05363 465 Gene3D - 18 118 IPR015300 -
Vivi5g05363 465 SUPERFAMILY DNA-binding pseudobarrel domain 21 113 IPR015300 -
Vivi5g05363 465 ProSiteProfiles B3 DNA-binding domain profile. 311 409 IPR003340 GO:0003677
Vivi5g05363 465 CDD B3_DNA 25 113 IPR003340 GO:0003677
Vivi5g05363 465 MobiDBLite consensus disorder prediction 211 281 - -
Vivi5g05363 465 MobiDBLite consensus disorder prediction 137 167 - -
Vivi5g05363 465 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05363 Vivi-Chr5 155843741 155846646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05363 299 407 REM Transcription Factor Family AT4G33280 39.450 6.21e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g05363 B3 2.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05363 - - tpra:123885991 660.988