Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05362 ATGGGTGGAAGAAGAGGAGTGTGCACAGCATGGGAGGAAGACATTTACTGGACACATTTTCAGTTTATCCATTTCACCCAATTTCTCCGCTCTGATTTTGATCAACAACTTGCAATTCCCAAAACATTTTCTGACAATATAAAGAAAAACTTGCCTGAAAGTGTGACCCTAAAAGGACCTGGTGGAGTGCTGTGGAATATAGAGTTGACAACTAGAGACCATACCTTGTACTTCACGCGCGGTTGGCAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTGATGGCAAGAGTTTATGTGAGAAAGCAGCTTGTTATTTTGTTCGAAAATGTCAGCATGCCGCCTATAAGGAACAGGGGGGTGGATGGTCTAACAAGAAAAGGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGCTGTGCCTATCGAAACTACTAATGGCAAGACTTCTAATGCTGGTATTGAATCTGCTTCCGCCGCCGAGCAATTCATGTCTGATGCAGTCACTGACACCGAGCCAAAAACTGGTCCCTTCCAAACAACGGGTAAACGGACGAGGAGGCCACCAAAAACTGTTTATGCCGATACACCTGTCCCTATCAAAAAGAGAGGAAGACCATCAAAAACCGCTAATTCTCACGAAAGAGCTCGTAATTGTGCTGAACTCTCTCCCAAGGTTTCTCCAAAGGTTGGATCTGGAACCAAGGAACTATATACTTCAAATAGAAGGCCTGTCACAAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGCAGACACGTTACTTGTAACCATGCGACCCACGCATGTATACAAGAAATTCTTCGTGTCATTCCCTAACAAGTGGATAATAAACCATCTTTCTCCGTCATCTCAAGAAGTGATATTACGCATGGGTGAGAGTGAATGGCTTGGGAAATACTTCTATTATAATATTCGTAACAGTGGAGGACTTACCGGTGGGTGGAAATATTTTGCGCTAGAAAATAATCTTGAAGAGTTTGATGTGTGTTTGTTTAAGCCTGCTGGTTATATGGACAAAACTTTGATCTTAGACATTACCATTTTTAGAGTAGTTGAGGAGATTACTCCTCTCACTGCTGTGAATTCACCTGGAAAGAAGAGGTCAAGTAAGAAAACACCAACCGAGGTGAAATCTCAGGGAAAGAGGAGGTCAATTAAGAAAACACGAACCGGTGCTGTCCAAACAGAACTCGAGTCCGTTGAACCACTTACCAGTGCTGTCTAA 1389 0.4212 MGGRRGVCTAWEEDIYWTHFQFIHFTQFLRSDFDQQLAIPKTFSDNIKKNLPESVTLKGPGGVLWNIELTTRDHTLYFTRGWQQFVKEHSLKENDFLVFKYNGESLFEVLIFDGKSLCEKAACYFVRKCQHAAYKEQGGGWSNKKRDSDNSVEEVKTPNGVDEGVSPEKSLHLNSIRVPLAVPIETTNGKTSNAGIESASAAEQFMSDAVTDTEPKTGPFQTTGKRTRRPPKTVYADTPVPIKKRGRPSKTANSHERARNCAELSPKVSPKVGSGTKELYTSNRRPVTKNEIENTLQLAQATCAADTLLVTMRPTHVYKKFFVSFPNKWIINHLSPSSQEVILRMGESEWLGKYFYYNIRNSGGLTGGWKYFALENNLEEFDVCLFKPAGYMDKTLILDITIFRVVEEITPLTAVNSPGKKRSSKKTPTEVKSQGKRRSIKKTRTGAVQTELESVEPLTSAV 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05362 462 Gene3D - 18 118 IPR015300 -
Vivi5g05362 462 Gene3D - 287 408 IPR015300 -
Vivi5g05362 462 MobiDBLite consensus disorder prediction 211 228 - -
Vivi5g05362 462 SUPERFAMILY DNA-binding pseudobarrel domain 21 113 IPR015300 -
Vivi5g05362 462 MobiDBLite consensus disorder prediction 211 278 - -
Vivi5g05362 462 MobiDBLite consensus disorder prediction 445 462 - -
Vivi5g05362 462 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 30 409 IPR044837 -
Vivi5g05362 462 ProSiteProfiles B3 DNA-binding domain profile. 308 406 IPR003340 GO:0003677
Vivi5g05362 462 MobiDBLite consensus disorder prediction 415 462 - -
Vivi5g05362 462 SUPERFAMILY DNA-binding pseudobarrel domain 309 396 IPR015300 -
Vivi5g05362 462 CDD B3_DNA 25 113 IPR003340 GO:0003677
Vivi5g05362 462 CDD B3_DNA 311 404 IPR003340 GO:0003677
Vivi5g05362 462 MobiDBLite consensus disorder prediction 137 167 - -
Vivi5g05362 462 Pfam B3 DNA binding domain 34 113 IPR003340 GO:0003677
Vivi5g05362 462 Pfam B3 DNA binding domain 310 399 IPR003340 GO:0003677
Vivi5g05362 462 ProSiteProfiles B3 DNA-binding domain profile. 22 115 IPR003340 GO:0003677
Vivi5g05362 462 SMART B3_2 308 406 IPR003340 GO:0003677
Vivi5g05362 462 SMART B3_2 25 115 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05362 Vivi-Chr5 155843740 155846646 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05362 296 404 REM Transcription Factor Family AT4G33280 39.450 6.07e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi5g05362 B3 2.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05362 - - psat:127106368 705.286