Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05354 ATGGAGAGTGGACAGTCACAGTCCCAGAACACCAAAGCTAGTACAGTTTCCACTAGTGAGGACAAATCCATTGCAGCTGAATCCAAGAAAAGCAAAGATGAAGACTTGATATTCGTTACGAACGAAAGGGTTGAGTTTGATTTGCAGGATTTGTTAAGGGCTTCAGCTGAGGTTTTGGGAAGTGGAAGCTTTGGTTCCACATACAAGGCCATGGTATTGACTGGACCAGTTGTGGTTGTGAAGAGATTTAAGCACATGAACAAAGTTGGTAAAAAAGAGTTTGTTGATCATATGAAAAGGCTTGGAGGGTTGTCACATCCTAATCTACTTCCTCTTGTTGCTTTCTACTATGGAAAAGATGAGAAGCTTTTGATGCATGATTTTGCAGAAAATGGTAGCTTGGCTAGTCATCTTCACGGTAAACATGGGTGTGATTTGGATTGGCCAACACGTTTGAAGATAATAAAAGGAGTAGCTAGAGGTTTAGCATATCTTTACAGAGAGTTTCCGGACGAAAAGTTACCACATGGACATCTAAAATCCTCAAATGTTGTGTTAGACCATTCATTCGAGCCTCGTTTAACCGAGTATGGACTAGTAGCAGTAACCGATTCAAAACATGCTCAACAATTCATGGTAGGTTTCAAGTCCCCGGAGGCGAGTCAAAACGAAGGGCCGGGCGAGAAGAGTGATGTATGGTGTTTAGGGATACTGATACTAGAGCTTTTGACAGGGAAGTTTCCTGCAAATTATTTGAGGCATGGGAAGGGAGCAACTGAGGATTTAGCAATGTGGGTGGAAGCTATAGTGAGGGAAGGATGGAGTGGAGAAGTGTTGGATAAAAGCATTGGTGGGAGTAGGGATAAGGAAGGTGAGATGATGAAGTTGATGAGGATTGGGATGAGTTGTTGTGAATGGAGTTTGGAGAATAGGTTTGGTTGGAGAGAGGCAGTGGCAAAGATTGAGGAGTTGAAGGAAATGGATAGTGTTGTTGAGGTTGGAGTTGAGAGTCTGAATTCTGATTTGTCTATGTGA 1035 0.4261 MESGQSQSQNTKASTVSTSEDKSIAAESKKSKDEDLIFVTNERVEFDLQDLLRASAEVLGSGSFGSTYKAMVLTGPVVVVKRFKHMNKVGKKEFVDHMKRLGGLSHPNLLPLVAFYYGKDEKLLMHDFAENGSLASHLHGKHGCDLDWPTRLKIIKGVARGLAYLYREFPDEKLPHGHLKSSNVVLDHSFEPRLTEYGLVAVTDSKHAQQFMVGFKSPEASQNEGPGEKSDVWCLGILILELLTGKFPANYLRHGKGATEDLAMWVEAIVREGWSGEVLDKSIGGSRDKEGEMMKLMRIGMSCCEWSLENRFGWREAVAKIEELKEMDSVVEVGVESLNSDLSM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05354 344 Gene3D Transferase(Phosphotransferase) domain 1 129 337 - -
Vivi5g05354 344 ProSitePatterns Protein kinases ATP-binding region signature. 59 81 IPR017441 GO:0005524
Vivi5g05354 344 FunFam pollen receptor-like kinase 1 21 128 - -
Vivi5g05354 344 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g05354 344 ProSiteProfiles Protein kinase domain profile. 53 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05354 344 MobiDBLite consensus disorder prediction 1 31 - -
Vivi5g05354 344 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 12 326 IPR046959 -
Vivi5g05354 344 Gene3D Phosphorylase Kinase; domain 1 17 128 - -
Vivi5g05354 344 Pfam Protein kinase domain 56 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05354 344 SUPERFAMILY Protein kinase-like (PK-like) 56 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05354 Vivi-Chr5 155730203 155731750 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05354 27 324 Receptor kinase-like Gene Family AT4G31250 57.475 1.30e-125 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vivi5g05354 Pkinase 8.3e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05354 - - vvo:131603366 693.73