Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05347 ATGAAGTGGGGTGGAAGAAAAACCTCTTCAGCTTCTTCTTCTTCTTCTAAGCCTTCCTTTATCTCTCATGTATCTCCTTTTACATGGCTGTCAAAGTTCAAGCAGATGAAAATCAATTCAGACTCGGAGACGACGAAACCTGAAAAGCCGAAGCAGAACGCAGCGTCTGATAATAGTTCATCGCAATTTCCTCATGGGAATAGAGGCAGGTTTTATCGAGGTGATGACGGTGATGATGATGATGATGATGCTTTCTGGAGATTGTCATTTGGTGAAGAGGTTACCAATGAACAAAAGAAGAAAAGTAAAGATATTATGAAGCCGGTCGCGAATAATTTGGAGGCTAAAAGAAATGGAAGAAGAAGAAGAAGAGAAGATAGAAATTTGCTGAATGAAACAAAGAGCGCAAAGGAACTTGAATACTTAAAGAAGAGAAATGAGAGAAAAGCACAGAGAATTTTACAAGATCAGCTCTTGAAATTACAGAATGCAGCAGCAGAAGAACAGTTTGCATCAAGTAAATGCAAATCCTTAGAACCGGATGAGCTTCAATTTGAATTGCCAAAAACCCGTTTATTTTCCTCTTATGTAGAAGCAGAAAGTTCTAACCTTGGAAGTATCAGAGAAAATGGTGTGAAACAATGTGATGAGATTAAAGCAAAGGGTAACAACAAAAAGAGGGAATCAGTTCATGTGAGCAGAGAGCTTCATAGGAGGAAACCAAAGCAGAGCTCCAAGGTAAGAGTGCGTTCTCCAAAGATGGCTACAAAAGTTGAAATCTGCAAAATAAAAACAATAGAAGATAAAAAGAAAGCAAAACTAAAGATGAAGAGAGAAGAAGAAATTGTGGAGGAAACAGAACAAGGTTTAGATAGCTTTGCTGTGGTGAAGTGTTCTTTGGATCCACAACAAGATTTCAGAGATTCAATGATTGAGATGATCAAAGAGAAACAGATAAGTCAACCAGAAGAAATGGAAGAGTTATTAGCATGTTATTTGAGTTTGAATTCAAAAGAATATCATGATTTAATTATCAAAGTGTTTAAGCAAGTATGGTTATGTATGAGTCAATCTAGTTTGTGTACTAAATCAGACAAGCAATGTTGTTACTATGATTAA 1119 0.3655 MKWGGRKTSSASSSSSKPSFISHVSPFTWLSKFKQMKINSDSETTKPEKPKQNAASDNSSSQFPHGNRGRFYRGDDGDDDDDDAFWRLSFGEEVTNEQKKKSKDIMKPVANNLEAKRNGRRRRREDRNLLNETKSAKELEYLKKRNERKAQRILQDQLLKLQNAAAEEQFASSKCKSLEPDELQFELPKTRLFSSYVEAESSNLGSIRENGVKQCDEIKAKGNNKKRESVHVSRELHRRKPKQSSKVRVRSPKMATKVEICKIKTIEDKKKAKLKMKREEEIVEETEQGLDSFAVVKCSLDPQQDFRDSMIEMIKEKQISQPEEMEELLACYLSLNSKEYHDLIIKVFKQVWLCMSQSSLCTKSDKQCCYYD 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05347 372 MobiDBLite consensus disorder prediction 220 235 - -
Vivi5g05347 372 MobiDBLite consensus disorder prediction 51 66 - -
Vivi5g05347 372 Pfam Transcriptional repressor, ovate 299 355 IPR006458 -
Vivi5g05347 372 ProSiteProfiles OVATE domain profile. 295 354 IPR006458 -
Vivi5g05347 372 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g05347 372 MobiDBLite consensus disorder prediction 38 76 - -
Vivi5g05347 372 NCBIfam uncharacterized plant-specific domain TIGR01568 294 355 IPR006458 -
Vivi5g05347 372 MobiDBLite consensus disorder prediction 114 135 - -
Vivi5g05347 372 Coils Coil 269 289 - -
Vivi5g05347 372 MobiDBLite consensus disorder prediction 220 249 - -
Vivi5g05347 372 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 136 356 IPR038933 GO:0045892
Vivi5g05347 372 MobiDBLite consensus disorder prediction 94 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05347 Vivi-Chr5 155645563 155647018 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vivi5g05347 Ovate 3.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05347 - - mtr:11406784 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05347 5 155645563 155647018 Vivi5g05347 5 155645563 155647018 ECH
Vivi5g05347 5 155645563 155647018 Vivi5g05347 5 155645563 155647018 PCT