Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05346 ATGGATGAAGCACAGGGAAGTTCAAGTTTGCCTCCTTTTCTGGCAAAGACTTATGAGATGGTGGATGATCCTTCCTCGGATCCTATTGTTTCTTGGAGTATGAGTAACAAAAGTTTTGTGGTGTGGAATCCCCCGGAGTTTGCGAGGGTTTTGCTCCCGAGATTCTTTAAGCATAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCAGAACAATGGGAATTCGCCAATGATGATTTTATAAAGGGGCAACCGCATCTTATGAAGAATATCCACAGACGGAAGCCGGTTCATAGCCATTCTCTGCATAATCTTCAAGCACAAGCTCCTTTATCGGAGTCTGATAGGCAGAGTTTGAATGATGAAATAGAGAAGATGAAACACGATAGAGAACAGCTCCTCATGGAGATAAATAGATACCAACATGAGTGGCAAACATATGAGATCCAAATGCATTGCTCAAAAGATCGGTTGGAAAAGTTAGAACAAAAGCAACAAAAGATGTTGTCTTCTGTTTCTCAAGTACTGCAGAAACCTGCGGTTGCTGTGAATCTCTTGCCACTGACAGAAACGATGGATAGAAAACGAAGGTTGCCGGCGAGAAGTGGCCGTGTTAATGATGAAGCTAGTATGGAAGATGGTATGGAAACTTCTGTAGCTTTGCCCAGAGAAATTGCAGAGAGTAACACTCTTTTGACATCAAACTCAGAGAGATTGGATCAACTTGAGTCATCCGTGGCATTTTGGGAAACTGTTGCAAACGAAATCGGCGACAACTTCGTTCACTCTCACTCAGACATTGATTTAGATGAACCTACAAGCTGTGCTGATAGTTTGTCTGTATCTTGTCGGCAACTAGAGGCTGAAATTCGACCCAAGTCGCCTGAAATTGACATGAACTCTGAACCAGCTGCTCCTCCTCCTGAGACTGTTGCATTAAAAGAACAGCCTGTAGGAATCACCACTGCGGCAACTGGGGTTAATGATGTATTCTGGGAACAGTTCTTGACAGAGGATCCCGGTGCGGCAGAAGCACAGGAAGTACAATCAGAAAGAAAGGATAATAATAGCAGAAAAAATGAAGGAAAACCTAGTGGTCCCGGAAGATTTTGGTGGAATATGGGGAGAGCGAATACTCTTCCGGAACAGACGGGGAATGTTGGTCAAGTAGAGAAAATTCAGTAG 1209 0.4318 MDEAQGSSSLPPFLAKTYEMVDDPSSDPIVSWSMSNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIKGQPHLMKNIHRRKPVHSHSLHNLQAQAPLSESDRQSLNDEIEKMKHDREQLLMEINRYQHEWQTYEIQMHCSKDRLEKLEQKQQKMLSSVSQVLQKPAVAVNLLPLTETMDRKRRLPARSGRVNDEASMEDGMETSVALPREIAESNTLLTSNSERLDQLESSVAFWETVANEIGDNFVHSHSDIDLDEPTSCADSLSVSCRQLEAEIRPKSPEIDMNSEPAAPPPETVALKEQPVGITTAATGVNDVFWEQFLTEDPGAAEAQEVQSERKDNNSRKNEGKPSGPGRFWWNMGRANTLPEQTGNVGQVEKIQ 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05346 402 MobiDBLite consensus disorder prediction 351 402 - -
Vivi5g05346 402 FunFam Heat shock transcription factor 1 6 103 - -
Vivi5g05346 402 SUPERFAMILY "Winged helix" DNA-binding domain 8 102 IPR036390 -
Vivi5g05346 402 Coils Coil 166 186 - -
Vivi5g05346 402 ProSitePatterns HSF-type DNA-binding domain signature. 52 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g05346 402 MobiDBLite consensus disorder prediction 353 368 - -
Vivi5g05346 402 Coils Coil 124 151 - -
Vivi5g05346 402 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 236 IPR027725 -
Vivi5g05346 402 Pfam HSF-type DNA-binding 13 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g05346 402 MobiDBLite consensus disorder prediction 385 402 - -
Vivi5g05346 402 Gene3D - 5 103 IPR036388 -
Vivi5g05346 402 SMART hsfneu3 9 102 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g05346 402 MobiDBLite consensus disorder prediction 298 317 - -
Vivi5g05346 402 PRINTS Heat shock factor (HSF) domain signature 13 36 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g05346 402 PRINTS Heat shock factor (HSF) domain signature 51 63 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi5g05346 402 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05346 Vivi-Chr5 155641666 155643751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05346 1 400 HSF AT4G18880 49.148 1.22e-115 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi5g05346 HSF_DNA-bind 9.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05346 K09419 - gmx:100798004 627.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05346 5 155641666 155643751 Vivi5g05346 5 155641666 155643751 ECH
Vivi5g05346 5 155641666 155643751 Vivi5g05346 5 155641666 155643751 PCT