Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05339 ATGGATTTTGTGAAGAAGTGTAAGAGAGTATTGAGAAGCAGCAAGAGCATGCATGCAGAGGAAAGTTGCAGCGGACGCTATTACAAATTATGTTCAGAGACAAGGCACAAAAAGCAAAAAGACAGTCATAAGAAACCACCACATGGTTGTGTTTGTGTCTATGTTGGAGATGAGAGACAGAGATTCATAATCAAGATCACCATATTCAATCACCCTTTGTTCAAACAATTTTTAGAAGATGTTGAGAATGAATATGGATATGGAAAAGATGGTCCTCTTTGGCTTCCTTGCAACCTTGACATGTTTTGTAAAACACTTGTGGAGATACAAACTTCTTTTCGAAAGAGTGATAATATATCATAA 363 0.3664 MDFVKKCKRVLRSSKSMHAEESCSGRYYKLCSETRHKKQKDSHKKPPHGCVCVYVGDERQRFIIKITIFNHPLFKQFLEDVENEYGYGKDGPLWLPCNLDMFCKTLVEIQTSFRKSDNIS 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05339 120 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 37 106 IPR003676 GO:0009733
Vivi5g05339 120 Pfam Auxin responsive protein 6 104 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05339 Vivi-Chr5 155547447 155547809 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05339 47 102 Calmodulin-binding Proteins AT4G34750 41.071 2.69e-14 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05339 K14488 - vvo:131618933 139.428