Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05334 ATGGCTAATGATAATTCAGCAAGAGTTGAAACTAATGATATTGAAAACAATGATACTGTTTTAGATGTAAACAAAGATTCTTCCCAAGAATCTCAAGACTCCTATGTTCCTTTCTTGCAAAAGTTAATAGCAGAGGTTGTTGGAACATATTTCTTGATATTTGCGGGATGTGCTTCGATTATAGTGAACAAAAACCATGACAACGTTGTTACACTTCCTGGGATTGCGATTGTTTGGGGACTCACTTTGTTGGTGTTGATTTATTCTCTTGGTCATATATCTGGAGCTCATTTCAATCCTGCTGTTACCATTGCTTTTGCTACTACAAGGAGGTTTCCACTGATACAGGTACCAGCTTATATACTGGCTCAACTCCTGGGGGGTACACTAGCAAGTGGGACTCTAAAACTAATATTCAGTGGCACACATGATCAGTTTTCAGGAACACTTGCAACTGGCTCTAACTTTCAAGCTTTTGTCCTTGAATTTATTGTCACATTTCACCTTATGTTTACCATTTCCGCGGTTGCAACCGATAATAGAGCGATTGGTGAGTTGGCTGGAATTGCAGTTGGATCTACATTATTGCTTAATGTGTTGATTGCTGGGCCGATAACAGGAGCATCAATGAATCCGGTTAGAAGTCTAGGACCTGCTTTTGTACACAACGAATACAGAGGAATATGGATATTTATAATTTCGCCGATTTTGGGAGCGATTGCAGGAGCATGGGTTTACAACCTTGTTAGGCACACTAACAAGCCATTGCGTGAGATCACCAAGAGTGCATCCTTCCTCAAAGAAGCAAAGCGTGGGGGAAATAAATGA 828 0.4034 MANDNSARVETNDIENNDTVLDVNKDSSQESQDSYVPFLQKLIAEVVGTYFLIFAGCASIIVNKNHDNVVTLPGIAIVWGLTLLVLIYSLGHISGAHFNPAVTIAFATTRRFPLIQVPAYILAQLLGGTLASGTLKLIFSGTHDQFSGTLATGSNFQAFVLEFIVTFHLMFTISAVATDNRAIGELAGIAVGSTLLLNVLIAGPITGASMNPVRSLGPAFVHNEYRGIWIFIISPILGAIAGAWVYNLVRHTNKPLREITKSASFLKEAKRGGNK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05334 275 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 PRINTS Major intrinsic protein family signature 192 214 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 PRINTS Major intrinsic protein family signature 40 59 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 PRINTS Major intrinsic protein family signature 229 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 PRINTS Major intrinsic protein family signature 161 179 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 SUPERFAMILY Aquaporin-like 36 259 IPR023271 -
Vivi5g05334 275 Pfam Major intrinsic protein 36 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Vivi5g05334 275 PANTHER AQUAPORIN NIP2-1 15 267 IPR034294 -
Vivi5g05334 275 Gene3D Glycerol uptake facilitator protein. 1 260 IPR023271 -
Vivi5g05334 275 CDD MIP 40 249 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05334 275 NCBIfam MIP family channel protein 44 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05334 Vivi-Chr5 155475661 155478333 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05334 1 274 Major Intrinsic Protein MIP AT5G37820 54.015 5.73e-103 301
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05334 K09874 - gmx:100813448 399.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05334 5 155475661 155478333 Vivi5g05333 5 155456508 155457959 PCT