Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05333 ATGGCTGAGAATTCACCAACACTTGAAACCAGTGACATTGTTGTAGATGTAAACAAAGAGTCCCCCCAAACATCAGAAGATTCTTCAGTCCCTTTCTTGCAAAAGTTGATAGCAGAGGTTGTAGGAACATATTTCTTGATATTTGCAGGATGTGCTTCAATTATAGTGAACAAAAGCACCGACAATGTTGTCACGCTTCCTGGGATCGCAATTGTTTGGGGACTCGCTTTGGTTGTGTTGATATATTCTCTCGGTCATATCTCTGGTGCTCATTTCAATCCGGCCGTCACCATTGCTTTTGCTTCCACAAGAAGTTTCCCATTGTTACATGTACCAGCTTATATATCAGCTCAGGTTTTGGGAGCAACACTAGCAAGTGGAACCCTAAAACTCATATTCAGTGGCAACAGTGGCCTACATGATCAGTTTTCAGGAACACTTCCATCTGGATCTAACCTTCAAACTTTTGTGTTTGAATTCATAATCACATTTTATCTTATGTTTATCATTTGTGGAGTCGCCACTGATAGCCGCGCGATTGGTGAGTTGGCGGGAATTGCAATTGGATCTACATTATTGCTTAATGTCATTATTTCGGGACCAATAACGGGAGCATCAATGAACCCGGTTAGAAGTTTAGGACCTGCTTTTATGCACAATGAATATAGAGGAATATGGATATATTTGGTGTCGCCGGTTTTGGGAGCTGTGGCCGGAGCATGGGTCTACAACCTTGTTAGGTATACTAACAAGCCATTGCGCGAAATCGTTAAGAGTGCATCCTTCCTCAAAGAAGCAAAGCGTGGGGAAACCAAATAG 819 0.4225 MAENSPTLETSDIVVDVNKESPQTSEDSSVPFLQKLIAEVVGTYFLIFAGCASIIVNKSTDNVVTLPGIAIVWGLALVVLIYSLGHISGAHFNPAVTIAFASTRSFPLLHVPAYISAQVLGATLASGTLKLIFSGNSGLHDQFSGTLPSGSNLQTFVFEFIITFYLMFIICGVATDSRAIGELAGIAIGSTLLLNVIISGPITGASMNPVRSLGPAFMHNEYRGIWIYLVSPVLGAVAGAWVYNLVRYTNKPLREIVKSASFLKEAKRGETK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05333 272 CDD MIP 34 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 SUPERFAMILY Aquaporin-like 29 256 IPR023271 -
Vivi5g05333 272 PRINTS Major intrinsic protein family signature 110 129 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 PRINTS Major intrinsic protein family signature 34 53 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 PRINTS Major intrinsic protein family signature 189 211 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 PRINTS Major intrinsic protein family signature 226 246 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 PRINTS Major intrinsic protein family signature 73 97 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 PRINTS Major intrinsic protein family signature 158 176 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 NCBIfam MIP family channel protein 38 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 ProSitePatterns MIP family signature. 91 99 IPR022357 -
Vivi5g05333 272 Gene3D Glycerol uptake facilitator protein. 4 256 IPR023271 -
Vivi5g05333 272 Pfam Major intrinsic protein 28 243 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05333 272 PANTHER AQUAPORIN NIP2-1 21 263 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05333 Vivi-Chr5 155456508 155457959 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05333 20 270 Major Intrinsic Protein MIP AT5G37820 55.378 5.73e-96 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05333 K09874 - gmx:100813448 402.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05333 5 155456508 155457959 Vivi5g05333 5 155456508 155457959 ECH
Vivi5g05334 5 155475661 155478333 Vivi5g05333 5 155456508 155457959 PCT
Vivi5g05333 5 155456508 155457959 Vivi5g05332 5 155444693 155446904 PCT