Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05332 ATGGGTGACAATTCAGGATGCAATGAAACCAATGAAATTGTTGTAAACGTAAACAAGGATGTCTCAAACAAAACTCAAGAAGATTCAAACGCTCATGCCACTGCTTCTCTCTTACAGAAGTTGGTAGCTGAAGTGGTAGGAACATATTTTTTAATATTTGCCGGTTGTGCTGCTGTGGCGGTGAACAAGAACAATGACAATGTTGTCACACATCCTGGAATTTCAATTGTTTGGGGACTTGCTGTCATGGTTCTTGTTTACTCTCTCGGTCATATCTCTGGTGCTCATTTCAATCCCGCGGTTACTATTGCTTTTGCTACCACCAGAAGATTTCCCTTGAAACAGGTACCAGCTTATATTGCAGCTCAAGTCTTTGGTTCTACACTTGCAAGTGGAACTCTAAGATTATTATTTACTGGCAAACATGATCAGTTTGTAGGAACACTTGCAGCTGGATCAAATCTGCAAGCTTTTGTGATAGAATTCATAATCACATTTTATCTTATGTTTATCATATCCGGAGTTGCCACCGATAATAGAGCGATTGGTGAATTGGCTGGGATTGCGGTTGGATCTACTGTACTTTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCGATGAATCCAGCCAGAAGCATAGGACCAGCTTTAATACACAATGAATATCGAGGAATATGGATATACATGGTTTCTCCGATTCTAGGAGCGGTGTGTGGTGCATGGGTCTATAATGTCATTAGGTACACTGATAAACCAGTTCGTGAAATCACCAAAAGTGGATCTTTTCTAAAAGCAGCAAAGCCATAG 813 0.4071 MGDNSGCNETNEIVVNVNKDVSNKTQEDSNAHATASLLQKLVAEVVGTYFLIFAGCAAVAVNKNNDNVVTHPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPLKQVPAYIAAQVFGSTLASGTLRLLFTGKHDQFVGTLAAGSNLQAFVIEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPALIHNEYRGIWIYMVSPILGAVCGAWVYNVIRYTDKPVREITKSGSFLKAAKP 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05332 270 SUPERFAMILY Aquaporin-like 35 259 IPR023271 -
Vivi5g05332 270 Gene3D Glycerol uptake facilitator protein. 3 260 IPR023271 -
Vivi5g05332 270 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 PANTHER AQUAPORIN NIP2-1 19 265 IPR034294 -
Vivi5g05332 270 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Vivi5g05332 270 Pfam Major intrinsic protein 34 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vivi5g05332 270 FunFam Aquaporin NIP1-1 5 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05332 Vivi-Chr5 155444693 155446904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05332 37 270 Major Intrinsic Protein MIP AT5G37810 61.966 3.64e-105 305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05333 5 155456508 155457959 Vivi5g05332 5 155444693 155446904 PCT