Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05330 ATGGATCCCAAAGCAGCATTGCTTGTGATTGCTCTTCTCAAAATGATACCTTCTGTCACGTATGAATTCAAGGGGTACAGCCTTCCCGGCTCGCTTCCGCCTCAATTGGTTAAGCTTCCATACCTCAAAGTAGTTGATTTTGCTTATAACTACCTAAATGGTACGATTCCAAAGGAATGGGGTTCGATTGAATTAACTTCAATCTCGCTACTTGTTAATCGTTTGTCCGGGGAGATTCCTAAGGAGTTGGGAAATATTACCACTCTAACATTCTTGAACCTTGAAGCAAACCAATTTTCCGGTCTTGTTCCCGCTGAACTTGGAAGTCTATTTAACCTTCAGTATTTGTTTTTATCATCCAATAAATTGTCTGGGAACTTACCAGTGACATTTTCTCAGTTACAGAATTTGACAGATTTTAGGATAAATGATAATAGTTTCAACGGAAAAATACCGAGCTTCATACAGAATTGGAAACAGCTTCAGAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCGTCAAATATATCGCTTTTGACTAATTTATCTCGACTGAGGATTAGTGACATGAATGGTCCAAGTCAGGATATTCCTATTTTAAGCAACATGACAGGAATGATAAGATTGGTTTTGAGGAATTGCAATATTACCGGAGAGATTCCTAGCTATATTTGGACAATGAAGGAGTTGGACATGTTGGATCTCAGTTTCAATAATTTGTTTGGTGAAATTCCAGCGAGGGCTCATGTGGGACATTTGAGATTTCTCTTGTTAACTGGCAACAAGCTAAGTGGTAGCGTACCTGACTCAGTGTTGATGGCAGGAAGCAATGTTGATATTTCTTACAACAACTTTACATATCAAGGACCTGAGAGATCGTCTTGTGGAGATAATCTGAATTTAAATCTAAACATGTTCCGGAGCTCTTTAGGGACCAATGCATTACAAGGGATTCTTCCATGTTCAACAACTTTCAAATGTCCTAGATATTCAACTTGTTTACACGTTAATTGTGGAGGAAAGGATATACATGTGAGGGAAAATGATAGCGATATTCGCTATGTTGGAGATGGATATGTGGCAGGCGGTGCTGCTAAACTTTTTAATGACGCTGGAAACCACTGGGGGTTTAGTAGCACCGGGGACTTCATGGATGACGGTGATTTCCAAAATACACGTTACTCCAGGTCTCTGTCGTCTTCAAGTTTGCCGGAATTATATAAAACGGCTCGTGCAGCTCCCATTACGCTTACTTATTTTCACTACTGCTTGGAAAATGGGAAATATACTGTGCATCTCCACTTTGCAGAAATACAATTTTCTAATGATAAAACATTTAGAAGTCTTGGGAAGCGCTTATTTAATATCTATGTTCAAGGAGTATTAGCTTGGAAGGATTTTAATATTGAAGACCAGTCACACCCTGCTCAAAAACCGCATACATTATCAAAATATAATGTGACTGTAACAGACGGTATTCTGGAGATTCGGTTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGCTAATGGAGTTTATGGTCCTCTTATTTCAGCTTTCTCTATTGTTTCAGATTCTAAACCTTGTTCAGACCAAAAGAATGGGAGGCGTAAAGTAGTCGTTGGAGTAGGGTTTGGAGTTACAGCTTTATGTCTAGTCCTTATTGTGGTAGGCATTTTTTGGAGGAAAGGCTACATTAAAGGAATTAAGAGAAGAGAAAAAGTTTTCAAAGGGCAAGATTTTCAGATGAGGACATTTACACTAAAACAAATTAGAGCCGCCACAGATGGATTCAGTCCTGCTAATAAGGTCGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATTAGTAGCAGTCAAACAGCTCTCCTCGAAGTCTCGGCAGGGAAACCGTGAATTTTTAAACGAGATAGGCATGATATCTTGTTTTCAGCATCCTAATCTAGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCTTGGCCCATGCTTTATTCAGTTCAGAAAATCGGCTTAAACTTGATTGGCCATCAAGGCTTAGGATTTGCATTGGCATAGCAAAAGGTCTAGCATTTCTTCACGAAGAATCAAGACTCAAGGTTGTTCATCGGGATATCAAAGCTACTAACGTGTTACTGGATGGAAACTTAAACCCTAAAATATCAGATTTTGGGTTGGCGAGGCTTGACGAAGAAGATAAGACTCATATCATTACCCGAGTGGCAGGCACAATAGGATATATGGCACCGGAATATGCTTTATGGGGTTACTTGAATTACAAGGCTGATGTTTACAGTTTTGGAGTCGTGGTCTTGGAAACTATTAGTGGAAAGAGTAATAACAATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATAAGGCATTATATCTTGAACGGACTGAAAACGTAATGCAACTGGTTGATGAGAGGTTGGGATTAGACGTAAACCCAACTGAAACAAAAAATGCTATAAAAGTAGCTCTCTTGTGTACAAATACATCGCCATCACTAAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAATAAGCATTCCAGATGTTATCCCAGAAGGTAACACATACAGTGAAGATTTAAGATTTAAAGCAATGAGGGACGTCCATCAAAACAAGGAAGGACATAGTTTGAGCACAAGCCGAACAGATGATTCAACAGGAATCCTTACACATAGCACTCCCTCGATGTTAGGCAATGATACTCATGAGATATCCTCCGAACTTTGA 2823 0.3964 MDPKAALLVIALLKMIPSVTYEFKGYSLPGSLPPQLVKLPYLKVVDFAYNYLNGTIPKEWGSIELTSISLLVNRLSGEIPKELGNITTLTFLNLEANQFSGLVPAELGSLFNLQYLFLSSNKLSGNLPVTFSQLQNLTDFRINDNSFNGKIPSFIQNWKQLQRLEMHASGLEGPIPSNISLLTNLSRLRISDMNGPSQDIPILSNMTGMIRLVLRNCNITGEIPSYIWTMKELDMLDLSFNNLFGEIPARAHVGHLRFLLLTGNKLSGSVPDSVLMAGSNVDISYNNFTYQGPERSSCGDNLNLNLNMFRSSLGTNALQGILPCSTTFKCPRYSTCLHVNCGGKDIHVRENDSDIRYVGDGYVAGGAAKLFNDAGNHWGFSSTGDFMDDGDFQNTRYSRSLSSSSLPELYKTARAAPITLTYFHYCLENGKYTVHLHFAEIQFSNDKTFRSLGKRLFNIYVQGVLAWKDFNIEDQSHPAQKPHTLSKYNVTVTDGILEIRFYWAGKGTTRIPANGVYGPLISAFSIVSDSKPCSDQKNGRRKVVVGVGFGVTALCLVLIVVGIFWRKGYIKGIKRREKVFKGQDFQMRTFTLKQIRAATDGFSPANKVGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGMISCFQHPNLVKLHGCCIEGDQLILVYEYMENNSLAHALFSSENRLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKATNVLLDGNLNPKISDFGLARLDEEDKTHIITRVAGTIGYMAPEYALWGYLNYKADVYSFGVVVLETISGKSNNNYMPSDNCVCLLDKALYLERTENVMQLVDERLGLDVNPTETKNAIKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVIPEGNTYSEDLRFKAMRDVHQNKEGHSLSTSRTDDSTGILTHSTPSMLGNDTHEISSEL 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05330 940 MobiDBLite consensus disorder prediction 912 940 - -
Vivi5g05330 940 FunFam Leucine-rich repeat receptor protein kinase EMS1 32 127 - -
Vivi5g05330 940 ProSiteProfiles Protein kinase domain profile. 602 876 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05330 940 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 22 907 - -
Vivi5g05330 940 Gene3D Phosphorylase Kinase; domain 1 569 677 - -
Vivi5g05330 940 SUPERFAMILY Protein kinase-like (PK-like) 585 873 IPR011009 -
Vivi5g05330 940 ProSitePatterns Serine/Threonine protein kinases active-site signature. 723 735 IPR008271 GO:0004672|GO:0006468
Vivi5g05330 940 Pfam Malectin domain 336 524 IPR021720 -
Vivi5g05330 940 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 334 529 - -
Vivi5g05330 940 MobiDBLite consensus disorder prediction 902 940 - -
Vivi5g05330 940 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 571 677 - -
Vivi5g05330 940 FunFam Putative LRR receptor-like serine/threonine-protein kinase 678 884 - -
Vivi5g05330 940 SMART serkin_6 602 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05330 940 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 128 194 - -
Vivi5g05330 940 Gene3D - 333 531 - -
Vivi5g05330 940 Gene3D Transferase(Phosphotransferase) domain 1 678 879 - -
Vivi5g05330 940 CDD STKc_IRAK 608 874 - -
Vivi5g05330 940 Pfam Protein tyrosine and serine/threonine kinase 606 872 IPR001245 GO:0004672|GO:0006468
Vivi5g05330 940 Gene3D Ribonuclease Inhibitor 199 310 IPR032675 -
Vivi5g05330 940 SUPERFAMILY L domain-like 25 272 - -
Vivi5g05330 940 Gene3D Ribonuclease Inhibitor 128 198 IPR032675 -
Vivi5g05330 940 Gene3D Ribonuclease Inhibitor 17 127 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05330 Vivi-Chr5 155427181 155433364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05330 19 767 Receptor kinase-like Gene Family AT1G29750 60.133 0.0 928
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g05330 PK_Tyr_Ser-Thr 1.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05330 - - mtr:11406167 1578.53