Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05329 ATGCTATCTAAGATCTTCTTTGCTCTCTCAATCATAACATTTACTTGTTTCACTTTCTTTGATTATGCACAATCTAAACTTCCTCAGCAAGAGCTTGATGCTCTTGAAGAAATCACTAGTACAATGGGTTCAACCTATTGGAAATTTGATGGTGATTCATGTCAAATTCAAATGCTTGGTTTAACTCAAAAGCCACCTGATGGATCCCAAAGCAGCATTGCTTGTGATTGCTCTTCTCAAAATGATACCTTCTGTCACGTAGTAAGGATTGAATTCAAGGGGTACAGCCTTCCCGGCTCGCTTCCGCCTCAATTGGTTAAGCTTCCATACCTCAAAGTAGTTGATTTTGCTTATAACTACCTAAATGGTACGATTCCAAAGGAATGGGGTTCGATTGAATTAACTTCAATCTCGCTACTTGTTAATCGTTTGTCCGGGGAGATTCCTAAGGAGTTGGGAAATATTACCACTCTAACATTCTTGAACCTTGAAGCAAACCAATTTTCCGGTCTTGTTCCCGCTGAACTTGGAAGTCTATTTAACCTTCAGTATTTGTTTTTATCATCCAATAAATTGTCTGGGAACTTACCAGTGACATTTTCTCAGTTACAGAATTTGACAGATTTTAGGATAAATGATAATAGTTTCAACGGAAAAATACCGAGCTTCATACAGAATTGGAAACAGCTTCAGAGACTAGAAATGCATGCAAGTGGACTGGAGGGACCTATCCCGTCAAATATATCGCTTTTGACTAATTTATCTCGACTGAGGATTAGTGACATGAATGGTCCAAGTCAGGATATTCCTATTTTAAGCAACATGACAGGAATGATAAGATTGGTTTTGAGGAATTGCAATATTACCGGAGAGATTCCTAGCTATATTTGGACAATGAAGGAGTTGGACATGTTGGATCTCAGTTTCAATAATTTGTTTGGTGAAATTCCAGCGAGGGCTCATGTGGGACATTTGAGATTTCTCTTGTTAACTGGCAACAAGCTAAGTGGTAGCGTACCTGACTCAGTGTTGATGGCAGGAAGCAATGTTGATATTTCTTACAACAACTTTACATATCAAGGACCTGAGAGATCGTCTTGTGGAGATAATCTGAATTTAAATCTAAACATGTTCCGGAGCTCTTTAGGGACCAATGCATTACAAGGGATTCTTCCATGTTCAACAACTTTCAAATGTCCTAGATATTCAACTTGTTTACACGTTAATTGTGGAGGAAAGGATATACATGTGAGGGAAAATGATAGCGATATTCGCTATGTTGGAGATGGATATGTGGCAGGCGGTGCTGCTAAACTTTTTAATGACGCTGGAAACCACTGGGGGTTTAGTAGCACCGGGGACTTCATGGATGACGGTGATTTCCAAAATACACGTTACTCCAGGTCTCTGTCGTCTTCAAGTTTGCCGGAATTATATAAAACGGCTCGTGCAGCTCCCATTACGCTTACTTATTTTCACTACTGCTTGGAAAATGGGAAATATACTGTGCATCTCCACTTTGCAGAAATACAATTTTCTAATGATAAAACATTTAGAAGTCTTGGGAAGCGCTTATTTAATATCTATGTTCAAGGAGTATTAGCTTGGAAGGATTTTAATATTGAAGACCAGTCACACCCTGCTCAAAAACCGCATACATTATCAAAATATAATGTGACTGTAACAGACGGTATTCTGGAGATTCGGTTCTACTGGGCTGGCAAGGGGACTACAAGGATTCCTGCTAATGGAGTTTATGGTCCTCTTATTTCAGCTTTCTCTATTGTTTCAGATTCTAAACCTTGTTCAGACCAAAAGAATGGGAGGCGTAAAGTAGTCGTTGGAGTAGGGTTTGGAGTTACAGCTTTATGTCTAGTCCTTATTGTGGTAGGCATTTTTTGGAGGAAAGGCTACATTAAAGGAATTAAGAGAAGAGAAAAAGTTTTCAAAGGGCAAGATTTTCAGATGAGGACATTTACACTAAAACAAATTAGAGCCGCCACAGATGGATTCAGTCCTGCTAATAAGGTCGGGGAAGGTGGTTTTGGTCCTGTCTACAAGGGTCAATTATCTGATGGTACATTAGTAGCAGTCAAACAGCTCTCCTCGAAGTCTCGGCAGGGAAACCGTGAATTTTTAAACGAGATAGGCATGATATCTTGTTTTCAGCATCCTAATCTAGTGAAACTTCATGGATGTTGCATTGAAGGGGATCAATTAATATTGGTGTATGAGTACATGGAAAATAATAGCTTGGCCCATGCTTTATTCAGTTCAGAAAATCGGCTTAAACTTGATTGGCCATCAAGGCTTAGGATTTGCATTGGCATAGCAAAAGGTCTAGCATTTCTTCACGAAGAATCAAGACTCAAGGTTGTTCATCGGGATATCAAAGCTACTAACGTGTTACTGGATGGAAACTTAAACCCTAAAATATCAGATTTTGGGTTGGCGAGGCTTGACGAAGAAGATAAGACTCATATCATTACCCGAGTGGCAGGCACAATAGGATATATGGCACCGGAATATGCTTTATGGGGTTACTTGAATTACAAGGCTGATGTTTACAGTTTTGGAGTCGTGGTCTTGGAAACTATTAGTGGAAAGAGTAATAACAATTACATGCCAAGTGATAATTGTGTTTGCCTTTTAGATAAGGCATTATATCTTGAACGGACTGAAAACGTAATGCAACTGGTTGATGAGAGGTTGGGATTAGACGTAAACCCAACTGAAACAAAAAATGCTATAAAAGTAGCTCTCTTGTGTACAAATACATCGCCATCACTAAGGCCTACAATGTCTGAGGTTGTAAACATGCTTGAAGGAAGAATAAGCATTCCAGATGTTATCCCAGAAGGTAACACATACAGTGAAGATTTAAGATTTAAAGCAATGAGGGACGTCCATCAAAACAAGGAAGGACATAGTTTGAGCACAAGCCGAACAGATGATTCAACAGGAATCCTTACACATAGCACTCCCTCGATGTTAGGCAATGATACTCATGAGATATCCTCCGAACTTTGA 3030 0.3934 MLSKIFFALSIITFTCFTFFDYAQSKLPQQELDALEEITSTMGSTYWKFDGDSCQIQMLGLTQKPPDGSQSSIACDCSSQNDTFCHVVRIEFKGYSLPGSLPPQLVKLPYLKVVDFAYNYLNGTIPKEWGSIELTSISLLVNRLSGEIPKELGNITTLTFLNLEANQFSGLVPAELGSLFNLQYLFLSSNKLSGNLPVTFSQLQNLTDFRINDNSFNGKIPSFIQNWKQLQRLEMHASGLEGPIPSNISLLTNLSRLRISDMNGPSQDIPILSNMTGMIRLVLRNCNITGEIPSYIWTMKELDMLDLSFNNLFGEIPARAHVGHLRFLLLTGNKLSGSVPDSVLMAGSNVDISYNNFTYQGPERSSCGDNLNLNLNMFRSSLGTNALQGILPCSTTFKCPRYSTCLHVNCGGKDIHVRENDSDIRYVGDGYVAGGAAKLFNDAGNHWGFSSTGDFMDDGDFQNTRYSRSLSSSSLPELYKTARAAPITLTYFHYCLENGKYTVHLHFAEIQFSNDKTFRSLGKRLFNIYVQGVLAWKDFNIEDQSHPAQKPHTLSKYNVTVTDGILEIRFYWAGKGTTRIPANGVYGPLISAFSIVSDSKPCSDQKNGRRKVVVGVGFGVTALCLVLIVVGIFWRKGYIKGIKRREKVFKGQDFQMRTFTLKQIRAATDGFSPANKVGEGGFGPVYKGQLSDGTLVAVKQLSSKSRQGNREFLNEIGMISCFQHPNLVKLHGCCIEGDQLILVYEYMENNSLAHALFSSENRLKLDWPSRLRICIGIAKGLAFLHEESRLKVVHRDIKATNVLLDGNLNPKISDFGLARLDEEDKTHIITRVAGTIGYMAPEYALWGYLNYKADVYSFGVVVLETISGKSNNNYMPSDNCVCLLDKALYLERTENVMQLVDERLGLDVNPTETKNAIKVALLCTNTSPSLRPTMSEVVNMLEGRISIPDVIPEGNTYSEDLRFKAMRDVHQNKEGHSLSTSRTDDSTGILTHSTPSMLGNDTHEISSEL 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05329 1009 Gene3D Phosphorylase Kinase; domain 1 638 746 - -
Vivi5g05329 1009 Gene3D Transferase(Phosphotransferase) domain 1 747 948 - -
Vivi5g05329 1009 Gene3D Ribonuclease Inhibitor 196 267 IPR032675 -
Vivi5g05329 1009 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 976 - -
Vivi5g05329 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase 747 953 - -
Vivi5g05329 1009 CDD STKc_IRAK 677 943 - -
Vivi5g05329 1009 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 263 - -
Vivi5g05329 1009 Pfam Malectin domain 405 593 IPR021720 -
Vivi5g05329 1009 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 403 598 - -
Vivi5g05329 1009 ProSitePatterns Serine/Threonine protein kinases active-site signature. 792 804 IPR008271 GO:0004672|GO:0006468
Vivi5g05329 1009 Gene3D Ribonuclease Inhibitor 268 381 IPR032675 -
Vivi5g05329 1009 SUPERFAMILY L domain-like 74 341 - -
Vivi5g05329 1009 MobiDBLite consensus disorder prediction 981 1009 - -
Vivi5g05329 1009 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Vivi5g05329 1009 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 640 746 - -
Vivi5g05329 1009 ProSiteProfiles Protein kinase domain profile. 671 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05329 1009 Gene3D Ribonuclease Inhibitor 47 195 IPR032675 -
Vivi5g05329 1009 SUPERFAMILY Protein kinase-like (PK-like) 654 942 IPR011009 -
Vivi5g05329 1009 Gene3D - 402 600 - -
Vivi5g05329 1009 SMART serkin_6 671 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05329 1009 Pfam Protein tyrosine and serine/threonine kinase 675 941 IPR001245 GO:0004672|GO:0006468
Vivi5g05329 1009 MobiDBLite consensus disorder prediction 971 1009 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05329 Vivi-Chr5 155427181 155433365 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05329 7 836 Receptor kinase-like Gene Family AT1G29750 59.206 0.0 1027
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi5g05329 PK_Tyr_Ser-Thr 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05329 - - mtr:11406167 1734.15