Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05318 ATGAGTTTTCCAAATGAATCCATGCCTGATTCTCCTCAGAGAAAGATTGGAAGGGGAAAGATTGAGATCAAGAGGATCGAAAACACGACGAATCGACAAGTTACCTTCTGCAAGCGTAGAAATGGCTTGCTTAAGAAGGCATATGAATTGTCTGTGCTTTGTGATGCAGAAGTTGCTCTTATAGTCTTCTCGACTCGTGGCCGTCTCTATGAATATGCAAATAACAGTGTGAAAGCTTCTATTGAGAGGTATAAGAAAGCATGTTCTGATACTTCTGGTGCTAAATCAGCTTCTGAGACTAATGCTCAGTATTATCAGCAAGAAGCTGCGAAACTGCGAGTGCAAATCAGTAATTTACAGAATCATAACAGGCAAATGATGGGTGAGGCTTTGAGCAATATGAACGGTAAGGAACTCAGAAACCTTGAGAGTAAACTAGAGAAAGGAATTAGCCGAATTCGCTCCAAGAAGAATGAAATGCTATTTGCAGAAATTGAGTACATGCAGAAGAGGGAGATAGAGTTGCATAATAGCAACCAGGTTCTTAGAGCAAAGATATCAGAAAATGATCAGAGGAACAACCATAGTGCTAATGTGTTGCATGGTGGCACAAGCTTTGAATGTATGCAACCTCAGCAACAATTCGACTCTCGCAGTTACTTCCAAGTGAATGAATTACAACCCAATAATAATCAGTATGCCAGGCAGGACCAGATGTCTCTTCAATTTGTGTAA 735 0.4041 MSFPNESMPDSPQRKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKASIERYKKACSDTSGAKSASETNAQYYQQEAAKLRVQISNLQNHNRQMMGEALSNMNGKELRNLESKLEKGISRIRSKKNEMLFAEIEYMQKREIELHNSNQVLRAKISENDQRNNHSANVLHGGTSFECMQPQQQFDSRSYFQVNELQPNNNQYARQDQMSLQFV 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05318 244 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g05318 244 CDD MADS_MEF2_like 17 90 IPR033896 GO:0000977|GO:0045944
Vivi5g05318 244 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Vivi5g05318 244 PANTHER SERUM RESPONSE FACTOR HOMOLOG 18 198 - -
Vivi5g05318 244 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Vivi5g05318 244 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Vivi5g05318 244 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Vivi5g05318 244 Gene3D - 28 99 IPR036879 GO:0003677|GO:0046983
Vivi5g05318 244 Pfam K-box region 98 186 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi5g05318 244 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Vivi5g05318 244 Coils Coil 139 159 - -
Vivi5g05318 244 Coils Coil 102 129 - -
Vivi5g05318 244 ProSiteProfiles K-box domain profile. 102 192 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vivi5g05318 244 FunFam agamous-like MADS-box protein AGL11 28 111 - -
Vivi5g05318 244 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Vivi5g05318 244 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 25 72 IPR002100 GO:0003677|GO:0046983
Vivi5g05318 244 ProSitePatterns MADS-box domain signature. 18 72 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05318 Vivi-Chr5 155296577 155300422 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05318 14 244 MADS-box Gene Family AT3G58780 64.831 3.87e-104 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vivi5g05318 K-box 2.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05318 K09264 - gmx:100790650 367.081