Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05305 ATGCAAGGGAACAATTATATTCCTCCTTTAACACCAAGGTCAAGATTGGAAAGGCTTTTGAGAGAAAGAGAGCTAAGGAAATCAAGCCGGTATAATCCATCGGCCGAGGACGGAAGAGATGGCAACAAGGAGTCAGAACAACTTAGTGATGCATTCCTAAGTGAGAATGAAGTTGAAGAGGTCGCGGAAACGGTGGCTGCGGAGGACAGGCCTCGCAAACAACGGTTGTTGGTGGTAGCTAACAGGTTGCCTGTTTCTGCTGTTAGGGAGGGTGTGGATTCATATCACCTTGAGATCAGTGTTGGTGGCCTTGTCAGTGCACTTTTAGGTGTAAAGGAATTTGACACAAGATGGATCGGATGGGCCGGTGTGAATGTGCCTGATGAAGTTGGGCAGAAAGCTTTGACTAAAGCTTTAGCTGAAATGCGATGCATTCCGGTGTTTCTTGACGAGGATATAGTTAATGAATACTATAATGGTTATTGCAACAACATCTTATGGCCGCTATTTCATTACCTTGGACTTCCACAAGAGGATAGACTTGCTACCACTCGTAGCTTCCAAACTCAATTCGATGCGTATAAGAAGGCAAACCAAATGTTTGCTGATGTAGTGAATAAGCATTATCAGGATGGAGATGTTGTTTGGTGCCATGATTATCACCTAATGTTTCTTCCAAGGTGTTTGAAAGAATACAACGACAAAATGAAAGTTGGATGGTTTCTCCATACACCTTTTCCTTCCTCGGAAATACATAGGACTCTGCCATCTAGATCATATCTTTTGAGATCTGTACTTGCTGCTGATTTGGTGGGGTTCCATACTTACGATTATGCTAGGCATTTTGTAAGTGCTTGTACTCGGATTCTTGGGATAGAAGGTACACCTGAAGGAGTAGAAGATCAAGGGAAGCTAACCCGTGTGGCTGCGTTTCCTATTGGAATTGACTCTGAAAGATTTATTAGAGCCCTTGCGCTTCCTGAAGTCCAGAATCACTTGAAAGATTTGAAAGAAAGATTTGCAGGCCGAAAGGTAATGTTGGGTGTTGATCGTCTTGATATGATAAAAGGAATTCCTCAGAAAATCTTGGCTTTCGAGAAGTTCCTAGAAGAGAATGCCCATTGGCGTGATAAAGTTGTCTTGCTACAAATTGCTGTGCCTACTAGGACTGATGTCTCTGAATATCAAAAGCTTACAAGCCAGGTGCATGAAATTGTTGGACGCATCAATGGAAGATTTGGAACACTTACTGCTGTTCCGATACACCATCTGGATCGGTCACTTGACTTTCATGCATTATGTGCACTCTATGCAGTTACTGATGTAGCACTTGTTACATCATTAAGGGATGGAATGAATCTTGTCAGCTATGAATTTGTTGCATGTCAAGCTTCCAAAAAGGGGGTTCTCATTTTAAGTGAGTTTGCAGGTGCAGCACAATCTCTTGGTGCTGGTGCTATCTTGGTAAATCCATGGAACATCACAGAAGTTGCTGCTTCTATTGGTTATGCTTTGGATATGCCAGCTGACGAAAGAGAAAAACGGCATCAGTTTAATTTCAAGCATGTGACAACTCACACATCACAAGAATGGGCTGCAACTTTTGTGAGTGAACTGAATGATACCATTGTTGAAGCTCAACTTAGAAAAAGACAAGTTCCTCCATTACTTCCCAATAAAGTTGCAGTTGATTGTTACTCAAAATCCAATAATCGGTTGATTATACTGGGTTTCAATTCCACTCTGACCGAACCAGTTGATACTCTTGGAAGGGGTGGTCAGATTAAAGAAATGGATTTAAAAGTACACCCTGATCTGAAGGAGCCTTTAAAGAAGTTATCGGAAGATCCAAAGACAACGATAATTGTTCTAAGTGGGAGCGGTAGAGCAGTCCTGGACAAAAACTTTGGTGAATACAATATGTGGTTGGCAGCGGAAAACGGGATGTTTCTGCGACTTACTTCAAGTGAATGGATGACAACCATGCCTGAAAATTTAAACATGGATTGGGTTGATAGTGTAAAGCATGTTTTTGAGTATTTCACTGAAAGAACCCCGAGGTCTCATTTTGAGCTTCGCGAAACTTCAATTATATGGAGCTATAAGTATGCAGATATTGAGTTTGGAAGACTTCAAGCAAGAGATCTGCTTCAGCATCTTTGGACAGGACCGATATCAAATGCATCTCTTGATGTTGTCCAAGGTGGTCGATCTGTCGAGGTTCGTGCAGTTGGTGTGTCAAAGGGAGCGGCTATCGATCGTATCCTCGGAGAGATAGTTCATAGCAAAGGCATGAAGGAACCAATTGATTATGTCCTATGCATTGGCCACTTTCTAGCAAAGGATGAAGATGTCTACAGATTTTTTGAGCCGGAGCTCCCTTCTGAAACATCTCCAATGGCGAAAGCTATGCTGTCCAATTCCTACAGGCCATCATCTCTGCCAAGAGCTTCATCCAGCAAAGGTGGATCTAAAGCAACTTACTATAAGAAGCAACGTTCGATGTCAAATATAGAAAGGCGAGACATAGAACGCACAAGTAGCGATCCTTGGAGACCAGCAAGTCGTGATAGAACATCATTGCACGAGGGTTCTTCGGTTCTTGATCTTAAAGGTGATAACTACTTCTCTTGCGCTGTTGCACGGAAGAGATCAAGCGCACGCTACCTTCTTAAAACCTCTGATGATATTGTGAATCTCTTAAGTGACCTGGCGGATCATTCTTGA 2727 0.4246 MQGNNYIPPLTPRSRLERLLRERELRKSSRYNPSAEDGRDGNKESEQLSDAFLSENEVEEVAETVAAEDRPRKQRLLVVANRLPVSAVREGVDSYHLEISVGGLVSALLGVKEFDTRWIGWAGVNVPDEVGQKALTKALAEMRCIPVFLDEDIVNEYYNGYCNNILWPLFHYLGLPQEDRLATTRSFQTQFDAYKKANQMFADVVNKHYQDGDVVWCHDYHLMFLPRCLKEYNDKMKVGWFLHTPFPSSEIHRTLPSRSYLLRSVLAADLVGFHTYDYARHFVSACTRILGIEGTPEGVEDQGKLTRVAAFPIGIDSERFIRALALPEVQNHLKDLKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENAHWRDKVVLLQIAVPTRTDVSEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQASKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIGYALDMPADEREKRHQFNFKHVTTHTSQEWAATFVSELNDTIVEAQLRKRQVPPLLPNKVAVDCYSKSNNRLIILGFNSTLTEPVDTLGRGGQIKEMDLKVHPDLKEPLKKLSEDPKTTIIVLSGSGRAVLDKNFGEYNMWLAAENGMFLRLTSSEWMTTMPENLNMDWVDSVKHVFEYFTERTPRSHFELRETSIIWSYKYADIEFGRLQARDLLQHLWTGPISNASLDVVQGGRSVEVRAVGVSKGAAIDRILGEIVHSKGMKEPIDYVLCIGHFLAKDEDVYRFFEPELPSETSPMAKAMLSNSYRPSSLPRASSSKGGSKATYYKKQRSMSNIERRDIERTSSDPWRPASRDRTSLHEGSSVLDLKGDNYFSCAVARKRSSARYLLKTSDDIVNLLSDLADHS 908
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05305 908 MobiDBLite consensus disorder prediction 834 863 - -
Vivi5g05305 908 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1-like 322 524 - -
Vivi5g05305 908 MobiDBLite consensus disorder prediction 22 46 - -
Vivi5g05305 908 CDD GT20_TPS 75 540 IPR001830 GO:0003824|GO:0005992
Vivi5g05305 908 Gene3D Glycogen Phosphorylase B; 322 524 - -
Vivi5g05305 908 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 664 744 - -
Vivi5g05305 908 SUPERFAMILY HAD-like 572 760 IPR036412 -
Vivi5g05305 908 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 74 543 - -
Vivi5g05305 908 MobiDBLite consensus disorder prediction 807 863 - -
Vivi5g05305 908 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 1 67 321 - -
Vivi5g05305 908 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 68 905 IPR001830 GO:0003824|GO:0005992
Vivi5g05305 908 NCBIfam alpha,alpha-trehalose-phosphate synthase (UDP-forming) 75 540 IPR012766 GO:0003825|GO:0005992
Vivi5g05305 908 Pfam Glycosyltransferase family 20 75 540 IPR001830 GO:0003824|GO:0005992
Vivi5g05305 908 Pfam Trehalose-phosphatase 596 797 IPR003337 GO:0003824|GO:0005992
Vivi5g05305 908 Gene3D Glycogen Phosphorylase B; 66 321 - -
Vivi5g05305 908 Gene3D - 598 758 IPR023214 -
Vivi5g05305 908 MobiDBLite consensus disorder prediction 807 833 - -
Vivi5g05305 908 Gene3D - 664 744 - -
Vivi5g05305 908 CDD HAD_TPP 573 792 - -
Vivi5g05305 908 MobiDBLite consensus disorder prediction 22 47 - -
Vivi5g05305 908 FunFam Alpha,alpha-trehalose-phosphate synthase 598 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05305 Vivi-Chr5 155179495 155184525 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05305 1 906 Trehalose Biosynthesis Gene Families AT1G78580 75.316 0.0 1398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05305 K16055 - gmx:100816642 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05305 5 155179495 155184525 Vivi5g05305 5 155179495 155184525 ECH