Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05304 ATGGGTATCCATGGTCTATTACCGCTTCTCAAATCCATAATGCTTCCCATTCACATCAAAGACCTTCACGGCTGCTCTGTCGCCATCGACACTTATTCTTGGCTCCACAAAGGCGCCCTTTCTTGCAGCACTGACCTCTGCAAAGGAATACCCACTTCCAGGCACATTGAGTATTGTATGCATAGAGTGAATTTGCTGCGCCATCATGGTGTTAAGCCTATTCTTGTATTTGATGGAGGTTTTCTACCCATGAAGCTTGAACAAGAGAACAAACGTGCTAGGGCTAGAAAGGATAATTTTGAACGTGCAGTTGAACATGATTCAAATGGAAATTCTACAGCTGCCTATGAGTGCTACCAGAAAGCTGTTGATATTTCGCCTGCGATTGCGCGAGAACTAATTCAGGTATTGAAGCAGGAGAGTGTTGAGTATATTGTTGCTCCTTATGAGGCAGATGCTCAAATGACATTCTTGGCAATTAGCAAACAGGTTGATGCAGTTATAACTGAAGATTCAGATCTTATACCATTTGGTTGTCCAAGAATTATCTTTAAAATGGACAAGTTTGGTCAAGCTGTTCAGTTTCAGTATTCAATGCTTCAAAAGAATAAGGAGCTTAGTTTTGAAGGGTTCAACAGACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGCGACTATCTTCCGTCCTTGCCAGGTATGGGTCTCAAAAAGGCCCATGCAAGCATTAAGAAGTTTAAATGTTATGACAAGGTTCTTAAGCACTTGAGATACAGTGGTATTTCTGTACCTCCCAATTATGAAGAGTCATTCCGGAAGGCTATACTTACTTTCCAACATCAGCGGGTTTATGATCCAGTTAGTGAAAATATTGTCCATTTGTCCAATATACCTGAGGATATCGGTGACGAGTTAGACTTTTTAGGCCCACCCTTGCCAAAAGATATAGCACAGGGAATAGCAGAAGGGGATCTTGATCCAATTACAAAAATGCCATTTGAGGGAGATAAATTTGTTGCCCGATTAGAAATTGCAGGAACTTCTCAATTCAAAGCTCTTAATCCTGAAAGGGTGAAGAAAAAGATTGATCTTCCCGTGCAGAAGAATCTCTTGACCAAGTATTTTTGTTTTGCATCTCTTGAAGCAAAAAGGGAATTCAAAGCACCCCGGACCTCACCTACTATTGCTAACCAAAGAACACTGATTTCCTCATCTGCCAATTCCCTGGAACATCAGACTTTAGAAGCTGCTGCTAGCGAAACAATAAACTCCGGTGCATCCTCGGTTGACTCCGAGAATACAGGCAGCGACTCTTCTCCTAATTGCTATATTGAAAACAGTTTTTCCTCCAAAACTTCAGACCTTATAGAATCACCATATCATGTATCTATTTCAGGAGATAAGAAGGGAAGTCCTGATCATACAATATTGAGACAGCCCCGGCAGCCAATTCATAAACCTTGTCTGGGGTCGCATAAGGAGCATGAGCTCACGAATGTCCAAGACAAAGTTGAAGGAAAAACCGAGGTAAAAAGAAAGGTAATTGTAAGGAGTCCTTACTTTCAGCAGAAACAAGTAGAAAAGAAAGCATGTGAGGAGAAACAAGAGAAGCTGTCCTCTGGCATATTCATTGATGAGAGAAAAAATGGCATATCTGGAGGTGATTTATGTAGCAGCTATTTGAAGAACAAAGACTTGAAAAGGAAGGCCACCCTTAATGACAATACTCAAAATGGCATATCTGGAGGTGATTTATGTAACAGCCATTTGAAGAACAAAGACTTGAAAAGGAAGGCCTCCCCTAATGACAATACTCAAAATGAAAACTTGCAGGCCAGGCAAATGCATCCTACTTCATCATCTACTTATGATAATGGTTGCTCTGATCACAATGTTGATGCGCCATTCAAAGAGGATAGTGCTGAAGAAGAAAAATTTGGGACAAACATTTCCCACTTAGGCCAATATTCAAAAATAGCTGAGAAGTCATTAGAAAGATTTGCCTCTGTAATATCGGCTTTTAAATATACACCCGGCTCTCGTGTCAGCGGTCTACGCGCTCCACTGAAAGATGTTCGCAACTCGCATAACAACAATAGGTCAACATCTGCGGACTTCAACAAATATGCATATGTGCCAAAACCAACGAAGACCAGAAGAGTAGCTCCTGATATTCGTAAAACTCGTAATGCTAGACCAGCGGCAGCTACGGACTTGAGCCAATTTGCTTATGTCCCAAAACAGAGACTAGAAGAATAG 2259 0.4112 MGIHGLLPLLKSIMLPIHIKDLHGCSVAIDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHHGVKPILVFDGGFLPMKLEQENKRARARKDNFERAVEHDSNGNSTAAYECYQKAVDISPAIARELIQVLKQESVEYIVAPYEADAQMTFLAISKQVDAVITEDSDLIPFGCPRIIFKMDKFGQAVQFQYSMLQKNKELSFEGFNRQMLLEMCILSGCDYLPSLPGMGLKKAHASIKKFKCYDKVLKHLRYSGISVPPNYEESFRKAILTFQHQRVYDPVSENIVHLSNIPEDIGDELDFLGPPLPKDIAQGIAEGDLDPITKMPFEGDKFVARLEIAGTSQFKALNPERVKKKIDLPVQKNLLTKYFCFASLEAKREFKAPRTSPTIANQRTLISSSANSLEHQTLEAAASETINSGASSVDSENTGSDSSPNCYIENSFSSKTSDLIESPYHVSISGDKKGSPDHTILRQPRQPIHKPCLGSHKEHELTNVQDKVEGKTEVKRKVIVRSPYFQQKQVEKKACEEKQEKLSSGIFIDERKNGISGGDLCSSYLKNKDLKRKATLNDNTQNGISGGDLCNSHLKNKDLKRKASPNDNTQNENLQARQMHPTSSSTYDNGCSDHNVDAPFKEDSAEEEKFGTNISHLGQYSKIAEKSLERFASVISAFKYTPGSRVSGLRAPLKDVRNSHNNNRSTSADFNKYAYVPKPTKTRRVAPDIRKTRNARPAAATDLSQFAYVPKQRLEE 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05304 752 SMART xpgineu 138 208 IPR006086 GO:0004518
Vivi5g05304 752 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Vivi5g05304 752 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Vivi5g05304 752 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Vivi5g05304 752 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Vivi5g05304 752 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 499 IPR006084 -
Vivi5g05304 752 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Vivi5g05304 752 SMART xpgn3 1 99 IPR006085 GO:0004518
Vivi5g05304 752 Gene3D - 209 281 - -
Vivi5g05304 752 Pfam XPG I-region 142 226 IPR006086 GO:0004518
Vivi5g05304 752 FunFam Exonuclease 1, putative 1 207 - -
Vivi5g05304 752 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Vivi5g05304 752 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Vivi5g05304 752 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Vivi5g05304 752 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vivi5g05304 752 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Vivi5g05304 752 MobiDBLite consensus disorder prediction 602 628 - -
Vivi5g05304 752 MobiDBLite consensus disorder prediction 595 634 - -
Vivi5g05304 752 Gene3D - 1 207 - -
Vivi5g05304 752 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 211 334 IPR036279 -
Vivi5g05304 752 MobiDBLite consensus disorder prediction 419 443 - -
Vivi5g05304 752 ProSitePatterns XPG protein signature 2. 141 155 IPR019974 GO:0016788
Vivi5g05304 752 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
Vivi5g05304 752 FunFam exonuclease 1 209 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05304 Vivi-Chr5 155165800 155171401 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05304 1 267 Core DNA Replication Machinery Family AT5G26680 25.357 1.34e-16 80.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05304 K10746 - gmx:100798062 1048.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05304 5 155165800 155171401 Vivi5g05304 5 155165800 155171401 ECH