Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05301 ATGCCTCGTAAAGTTAACTATGGAATCGATTACTATGATGATGACTATGAGGACTATGATGACTATGATTATGATGTTGAAGCTGAAAACTATGGAGCTGGAGAAGGATCTGATGCAAAGCAAGAGACCTTTAGGCATGGAGTTTGGCAATGCCCCATTTGCACCTATGACAATGATGAGAGTATGACTTCGTGTGATATTTGTGGCGTTGTACGTCATCCCCTGGTTAACAATGGAACTTCAAACAGTAACAAAACAGTTGAAGAAATAAACAAAACTCCTGGAGCATCCAAGCTGGCCAGGTCTATTTTTCAATCATTACCACACCAGAGTCCCAAAGAGGGTGTATTATTTCCAACGCAAGGTGTTGGTTTTTGGACAGATAGCAGTAACATCTACAAGCTTGAGAATGTCCATGGAGAATTTCATGAAATTCATAAGACTTCTAATACTCAAAGCCATCCCTCTTTAAATATAGATCCTTTCAAGTTTGACGTTCCATCTCCAGATGATGTGGTTCATACTGGCCTACATTCTTCAAAAGTGGGATTGAAAGACAAAGTTAAAAACGCTAAAGATTCACAGTTTTCACAAAACAGCAGAGAGAAGAGTGAACTTGCTGTAGAATTCAATACTGAAAGTGCAGACAACTCATCATCTTTAATACAAAAGAGCAAGCAGGGTAGTGCAGCTCAAAACAAACTTTCCAAAAATGTAGAAATTGATCTGGAAACAATTGGTGATACTTTAAACAGTTTATCAGCATTTTTGCCAAAGGACAAAGGGGATGATGCAAAAAAAATAAATTCTTCAAAAAATGGTACAAATGGTATCCAATCAAGCAAAGAATACTCCAGTCGTTTGTCTGCACTGCCCAAAGTCGAAGAAAGTGATAAGCTTAGTTTGTCTTCTAACAAAGATGGAAAATCTGAAAGTGCTTCCAGCAGTTTTAACCACTCACTTCTTGATGTAAAATCTGGAAATTTTAATAAAACTACTTCTAAGGCACCTCATCAACAAGTTTCTTACACGCCAGAAAAGTGGATGCTTCCTCAACATTCTGAAGATACATTGACTCAGTTGAATCTTGCGATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCCGGCAGGTTATTACACCTATTGGGACGAATTTCTAAGAAAGAAATGCACAAGAATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAACGGGGAATAACCATGACAGTGGCTGTGGCATATTTCGACACTAAGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGATTTCATCCCAAACATGATTTCTGGTGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGTGGCAAAGGACAAACAAAAGAGCATGCACAGCTTATTAGAAGTTTTGGTGTAGACCATGTTATAGTTGCAGTGAATAAGATGGATGCTGTGGCATACTCCAAAGACCGATTTGATTTTATAAGACATCAGCTGGGAACTTTTCTCCGCTCATGTGGGTTCAAAGATTCTTCTCTCTTATGGATTCCCCTGAGTGCCATGGAGAATCAAAATCTGGTAGCATCCCCTTCTGATGCTCATTTCAAAAACTGGTATACTGGACCTTATCTTTTAGATGCAGTTGACTCACTACAACCTCCTACTAGAGAATTCGCTAAACCTCTGCTAATGCCAATATGTGATACCATCAAATCAACTGCACAAGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGAAGTGGAACAAAGGTACTAGTTATGCCTTCAGATGTTGTTGGAACAGTACGCACATTGGAGCGCGATTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTAGCTGTAACGTTGCATGGTGTTGATGGAAGTCATGTATTGGCTGGAGGTGTATTATGCCATCCCGACTTTCCTGTTGCAGTTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTGGATGGTGCAAGTCCCATATTAGTTGGCGCTCAGTTAGAGTTTCATATTCATCATGCAAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAATACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTATGAATGAGCCAGTCTGCGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAATTGCTGTTGGACTTGTGACAAGAATAATTGTAGAACAAGATTAG 2370 0.4013 MPRKVNYGIDYYDDDYEDYDDYDYDVEAENYGAGEGSDAKQETFRHGVWQCPICTYDNDESMTSCDICGVVRHPLVNNGTSNSNKTVEEINKTPGASKLARSIFQSLPHQSPKEGVLFPTQGVGFWTDSSNIYKLENVHGEFHEIHKTSNTQSHPSLNIDPFKFDVPSPDDVVHTGLHSSKVGLKDKVKNAKDSQFSQNSREKSELAVEFNTESADNSSSLIQKSKQGSAAQNKLSKNVEIDLETIGDTLNSLSAFLPKDKGDDAKKINSSKNGTNGIQSSKEYSSRLSALPKVEESDKLSLSSNKDGKSESASSSFNHSLLDVKSGNFNKTTSKAPHQQVSYTPEKWMLPQHSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGAFEAGMDGGKGQTKEHAQLIRSFGVDHVIVAVNKMDAVAYSKDRFDFIRHQLGTFLRSCGFKDSSLLWIPLSAMENQNLVASPSDAHFKNWYTGPYLLDAVDSLQPPTREFAKPLLMPICDTIKSTAQGQVSACGKLEAGALRSGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLHGVDGSHVLAGGVLCHPDFPVAVAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSRILSILDPKTGKVTKKSPRCLTSKQSAVIEVIMNEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVTRIIVEQD 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05301 789 CDD EF1_alpha 362 581 - -
Vivi5g05301 789 FunFam Elongation factor 1 alpha-like protein 351 582 - -
Vivi5g05301 789 Gene3D Translation factors 679 788 - -
Vivi5g05301 789 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vivi5g05301 789 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 681 784 IPR009001 -
Vivi5g05301 789 Gene3D Translation factors 586 675 - -
Vivi5g05301 789 MobiDBLite consensus disorder prediction 269 287 - -
Vivi5g05301 789 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vivi5g05301 789 Gene3D - 43 95 - -
Vivi5g05301 789 MobiDBLite consensus disorder prediction 212 232 - -
Vivi5g05301 789 Pfam Elongation factor Tu GTP binding domain 361 577 IPR000795 GO:0003924|GO:0005525
Vivi5g05301 789 CDD HBS1_C_III 676 784 - -
Vivi5g05301 789 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 360 603 IPR027417 -
Vivi5g05301 789 Gene3D - 349 582 IPR027417 -
Vivi5g05301 789 PRINTS GTP-binding elongation factor signature 421 429 IPR000795 GO:0003924|GO:0005525
Vivi5g05301 789 PRINTS GTP-binding elongation factor signature 441 451 IPR000795 GO:0003924|GO:0005525
Vivi5g05301 789 PRINTS GTP-binding elongation factor signature 457 468 IPR000795 GO:0003924|GO:0005525
Vivi5g05301 789 PRINTS GTP-binding elongation factor signature 362 375 IPR000795 GO:0003924|GO:0005525
Vivi5g05301 789 PRINTS GTP-binding elongation factor signature 502 511 IPR000795 GO:0003924|GO:0005525
Vivi5g05301 789 Pfam Elongation factor Tu C-terminal domain 680 784 IPR004160 -
Vivi5g05301 789 FunFam Translation elongation factor EF-1 585 675 - -
Vivi5g05301 789 SMART zf_4 47 71 IPR001876 -
Vivi5g05301 789 SUPERFAMILY Translation proteins 580 675 IPR009000 -
Vivi5g05301 789 PANTHER TRANSLATION FACTOR 356 784 - -
Vivi5g05301 789 MobiDBLite consensus disorder prediction 256 317 - -
Vivi5g05301 789 FunFam elongation factor 1-alpha isoform X4 679 788 - -
Vivi5g05301 789 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 358 589 IPR000795 GO:0003924|GO:0005525
Vivi5g05301 789 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05301 Vivi-Chr5 155100300 155107825 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05301 46 84 Eukaryotic Initiation Factors Gene Family AT5G10630 58.974 7.34e-11 63.9