Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05300 ATGCCTCGTAAAGTTAACTATGGAATCGATTACTATGATGATGACTATGAGGACTATGATGACTATGATTATGATGTTGAAGCTGAAAACTATGGAGCTGGAGAAGGATCTGATGCAAAGCAAGAGACCTTTAGGCATGGAGTTTGGCAATGCCCCATTTGCACCTATGACAATGATGAGAGTATGACTTCGTGTGATATTTGTGGCGTTGTACGTCATCCCCTGGTTAACAATGGAACTTCAAACAGTAACAAAACAGACAAAGTTAAAAACGCTAAAGATTCACAGTTTTCACAAAACAGCAGAGAGAAGAGTGAACTTGCTGTAGAATTCAATACTGAAAGTGCAGACAACTCATCATCTTTAATACAAAAGAGCAAGCAGGGTAGTGCAGCTCAAAACAAACTTTCCAAAAATGTAGAAATTGATCTGGAAACAATTGGTGATACTTTAAACAGTTTATCAGCATTTTTGCCAAAGGACAAAGGGGATGATGCAAAAAAAATAAATTCTTCAAAAAATGGTACAAATGGTATCCAATCAAGCAAAGAATACTCCAGTCGTTTGTCTGCACTGCCCAAAGTCGAAGAAAGTGATAAGCTTAGTTTGTCTTCTAACAAAGATGGAAAATCTGAAAGTGCTTCCAGCAGTTTTAACCACTCACTTCTTGATGTAAAATCTGGAAATTTTAATAAAACTACTTCTAAGGCACCTCATCAACAAGTTTCTTACACGCCAGAAAAGTGGATGCTTCCTCAACATTCTGAAGATACATTGACTCAGTTGAATCTTGCGATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCCGGCAGGTTATTACACCTATTGGGACGAATTTCTAAGAAAGAAATGCACAAGAATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAACGGGGAATAACCATGACAGTGGCTGTGGCATATTTCGACACTAAGAAATATCACGTTGTTGTGCTTGACTCTCCTGGTCATAAAGATTTCATCCCAAACATGATTTCTGGTGCAACACAAGCTGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGTGGCAAAGGACAAACAAAAGAGCATGCACAGCTTATTAGAAGTTTTGGTGTAGACCATGTTATAGTTGCAGTGAATAAGATGGATGCTGTGGCATACTCCAAAGACCGATTTGATTTTATAAGACATCAGCTGGGAACTTTTCTCCGCTCATGTGGGTTCAAAGATTCTTCTCTCTTATGGATTCCCCTGAGTGCCATGGAGAATCAAAATCTGGTAGCATCCCCTTCTGATGCTCATTTCAAAAACTGGTATACTGGACCTTATCTTTTAGATGCAGTTGACTCACTACAACCTCCTACTAGAGAATTCGCTAAACCTCTGCTAATGCCAATATGTGATACCATCAAATCAACTGCACAAGGACAGGTGTCTGCTTGTGGTAAACTGGAAGCAGGAGCTCTTCGAAGTGGAACAAAGGTACTAGTTATGCCTTCAGATGTTGTTGGAACAGTACGCACATTGGAGCGCGATTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTAGCTGTAACGTTGCATGGTGTTGATGGAAGTCATGTATTGGCTGGAGGTGTATTATGCCATCCCGACTTTCCTGTTGCAGTTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTGGATGGTGCAAGTCCCATATTAGTTGGCGCTCAGTTAGAGTTTCATATTCATCATGCAAAGGAACCTGCTAGAGTTTCAAGAATATTGTCAATACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACGTCAAAACAAAGTGCAGTAATTGAGGTGATTATGAATGAGCCAGTCTGCGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAATTGCTGTTGGACTTGTGACAAGAATAATTGTAGAACAAGATTAG 2073 0.4028 MPRKVNYGIDYYDDDYEDYDDYDYDVEAENYGAGEGSDAKQETFRHGVWQCPICTYDNDESMTSCDICGVVRHPLVNNGTSNSNKTDKVKNAKDSQFSQNSREKSELAVEFNTESADNSSSLIQKSKQGSAAQNKLSKNVEIDLETIGDTLNSLSAFLPKDKGDDAKKINSSKNGTNGIQSSKEYSSRLSALPKVEESDKLSLSSNKDGKSESASSSFNHSLLDVKSGNFNKTTSKAPHQQVSYTPEKWMLPQHSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKEMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGAFEAGMDGGKGQTKEHAQLIRSFGVDHVIVAVNKMDAVAYSKDRFDFIRHQLGTFLRSCGFKDSSLLWIPLSAMENQNLVASPSDAHFKNWYTGPYLLDAVDSLQPPTREFAKPLLMPICDTIKSTAQGQVSACGKLEAGALRSGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLHGVDGSHVLAGGVLCHPDFPVAVAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSRILSILDPKTGKVTKKSPRCLTSKQSAVIEVIMNEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVTRIIVEQD 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05300 690 Pfam Elongation factor Tu C-terminal domain 581 685 IPR004160 -
Vivi5g05300 690 SUPERFAMILY Translation proteins 481 576 IPR009000 -
Vivi5g05300 690 ProSiteProfiles Zinc finger RanBP2 type profile. 45 74 IPR001876 -
Vivi5g05300 690 FunFam Elongation factor 1 alpha-like protein 252 483 - -
Vivi5g05300 690 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 259 490 IPR000795 GO:0003924|GO:0005525
Vivi5g05300 690 SMART zf_4 47 71 IPR001876 -
Vivi5g05300 690 MobiDBLite consensus disorder prediction 76 133 - -
Vivi5g05300 690 Gene3D Translation factors 487 576 - -
Vivi5g05300 690 FunFam elongation factor 1-alpha isoform X4 580 689 - -
Vivi5g05300 690 CDD EF1_alpha 263 482 - -
Vivi5g05300 690 Gene3D - 250 483 IPR027417 -
Vivi5g05300 690 CDD HBS1_C_III 577 685 - -
Vivi5g05300 690 Gene3D Translation factors 580 689 - -
Vivi5g05300 690 Pfam Elongation factor Tu GTP binding domain 262 478 IPR000795 GO:0003924|GO:0005525
Vivi5g05300 690 ProSitePatterns Zinc finger RanBP2-type signature. 49 68 IPR001876 -
Vivi5g05300 690 FunFam Translation elongation factor EF-1 486 576 - -
Vivi5g05300 690 PRINTS GTP-binding elongation factor signature 342 352 IPR000795 GO:0003924|GO:0005525
Vivi5g05300 690 PRINTS GTP-binding elongation factor signature 263 276 IPR000795 GO:0003924|GO:0005525
Vivi5g05300 690 PRINTS GTP-binding elongation factor signature 403 412 IPR000795 GO:0003924|GO:0005525
Vivi5g05300 690 PRINTS GTP-binding elongation factor signature 322 330 IPR000795 GO:0003924|GO:0005525
Vivi5g05300 690 PRINTS GTP-binding elongation factor signature 358 369 IPR000795 GO:0003924|GO:0005525
Vivi5g05300 690 Gene3D - 43 103 - -
Vivi5g05300 690 MobiDBLite consensus disorder prediction 101 133 - -
Vivi5g05300 690 SUPERFAMILY Ran binding protein zinc finger-like 47 72 IPR036443 -
Vivi5g05300 690 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 582 685 IPR009001 -
Vivi5g05300 690 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 261 504 IPR027417 -
Vivi5g05300 690 MobiDBLite consensus disorder prediction 157 218 - -
Vivi5g05300 690 PANTHER TRANSLATION FACTOR 257 685 - -
Vivi5g05300 690 MobiDBLite consensus disorder prediction 170 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05300 Vivi-Chr5 155100300 155107825 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05300 46 686 Eukaryotic Initiation Factors Gene Family AT5G10630 59.568 0.0 765
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05300 K14416 - gmx:100798594 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g03497 4 152382958 152385501 Vivi5g05300 5 155100300 155107825 PCT