Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05275 ATGTCGATGAATAGACGTTTGGAATTCGGGAGGCCTGTCTCAAGTAAAAGAAGATTGAAGGATTTATTGGTTCAAAAAGATAATCGTTTTTGCGCTGATTGTGGTTCTCCAGATCCTAAATGGGCGTCAGCCAATATTGGAGTTTTTGTATGCTTAAAATGCTGCAGTGTGCACAGAAGTCTTGGTACTCATATATCAAGGATTTTGTCGGTGACATTGGATGAATGGTCGGGTGATGAAATAGATGCAATGATGGAAGTTGGAGGAAATGCCTCTGCAAATTCAATTTATGAGGCTTATATCCCGGAAGGATATACAAAGCCTGGACCAGATGCCAGTCATGAGGAACGTGAAAAATTCATCAGGGGAAAGTATGAGCGTCAAGAATTTTTGAAACATAGTCTGCGCATTGTATCAAACAAAAGCAAAAGCAATCGTCAATCAAGTTTCGCCAAAAAGATTATGGATAGCTTTCGAACTACTAGTGGTTCAAAGAATATGGAAGGAATGGTAGAATTCATTGGAATGTTGAAAGTGAAAGTGGTCAAAGGCACAAATTTAGCAATCAGAGATATGATGACAAGCGATCCATACGTTATTTTGAAGCTTGGCCAACAGACTGTTCAGACGGCCATAATAAAGAGTAATTTGAATCCGGTTTGGAATGAGGAACTTATGTTATCTGTTCCTCAGCAATATGGAACGATAAGTTTGAAGGTATTTGATCATGACTTGTTTTCGGCGGATGATATAATGGGAGAAGCAGAGATTGATCTTCAACCTCTGATAACATCTGCGATGGCATTTGGAGATGCTGGAATGTTTGATGATATGCAAATAGGAAAATGGCTGAAATCAAATGACAATGCACTTGTAGAAGATAGCATAGTCAATATCATTGATGGTAAGGTTAAACAAGATATGTTAATCAAGCTTCAGAATGTTGAATGTGGAGAATTAAACTTAGAACTTGAGTGGTTATCTCTTGATCATTAG 996 0.3805 MSMNRRLEFGRPVSSKRRLKDLLVQKDNRFCADCGSPDPKWASANIGVFVCLKCCSVHRSLGTHISRILSVTLDEWSGDEIDAMMEVGGNASANSIYEAYIPEGYTKPGPDASHEEREKFIRGKYERQEFLKHSLRIVSNKSKSNRQSSFAKKIMDSFRTTSGSKNMEGMVEFIGMLKVKVVKGTNLAIRDMMTSDPYVILKLGQQTVQTAIIKSNLNPVWNEELMLSVPQQYGTISLKVFDHDLFSADDIMGEAEIDLQPLITSAMAFGDAGMFDDMQIGKWLKSNDNALVEDSIVNIIDGKVKQDMLIKLQNVECGELNLELEWLSLDH 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05275 331 CDD C2_ArfGAP 174 318 - -
Vivi5g05275 331 SMART arf_gap_3 17 138 IPR001164 GO:0005096
Vivi5g05275 331 Pfam C2 domain 176 265 IPR000008 -
Vivi5g05275 331 Gene3D C2 domain 173 331 IPR035892 -
Vivi5g05275 331 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 11 330 IPR044518 GO:0005096|GO:0005543
Vivi5g05275 331 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 171 269 IPR035892 -
Vivi5g05275 331 SUPERFAMILY ArfGap/RecO-like zinc finger 16 132 IPR037278 -
Vivi5g05275 331 FunFam Arf-GAP with dual PH domain-containing protein 1 11 139 - -
Vivi5g05275 331 Gene3D Arf GTPase activating protein 8 139 IPR038508 -
Vivi5g05275 331 Pfam Putative GTPase activating protein for Arf 17 132 IPR001164 GO:0005096
Vivi5g05275 331 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Vivi5g05275 331 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Vivi5g05275 331 PRINTS HIV Rev interacting protein signature 68 89 IPR001164 GO:0005096
Vivi5g05275 331 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 145 IPR001164 GO:0005096
Vivi5g05275 331 SMART C2_3c 176 271 IPR000008 -
Vivi5g05275 331 ProSiteProfiles C2 domain profile. 157 272 IPR000008 -
Vivi5g05275 331 CDD ArfGap 19 125 - -
Vivi5g05275 331 FunFam ADP-ribosylation factor GTPase-activating protein AGD12 173 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05275 Vivi-Chr5 154795162 154798593 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05275 9 331 C2H2 Transcription Factor Family AT4G21160 71.818 0.0 512