Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05265 ATGGGAAATTGTTGGTTTAGGGAATCATCAGATTATAGAGTCTCATCCAATGCAAAACCAGAACAAAACCAGGTAGCAGTGAAAGAAAGATATGAACATGATGATTGTAAGTTACCATCAAATCCTAAAGAAGTTGAAGATCTCCGACGCGATTCAGCTGCAAATCATTTGATTGCATTCACTTACGATGAACTAAAGATAATAACCGGACATTTTAGACCAGATCGTGTGTTGGGTGGTGGCGGATTTGGAAGTGTTTATAAAGGCTTTATTTCTGAGGAGTTAAGAGAAGGCCTTCCTTCAATTCCTGTGGCTGTTAAGGTTCATGATGGAGACAATAGTCATCAAGGTCATAGAGAATGGCTGGCAGAAGTGATATTTTTGGGGGAATGTTCACATCCAAATTTAGTGAAATTAATTGGATACTGCTGTGAAAATGAACATAGGGTGCTAGTTTATGAGTACATGGCCAGAGGAAGTGTGGAAAACAATTTGTTCTCAAAAATTTTGCTTCCTTTGCCATGGTCCATAAGAATGAAGATTGCATTTGGTGCTGCCAAAGGACTTGCATTTCTTCATGAAGCAGAAAAACCGGTCATCTATCGTGATTTCAAAACATCAAATATTTTACTGGATCTGGACTATAATGCAAAACTTTCTGACTTTGGCCTTGCTAAAGATGGACCAGTTGGAGACAAGTCTCATGTTTCTACTAGAATTATGGGAACATATGGATATGCTGCACCAGAATACATTATGACAGGTCATTTGACTCCTAGAAGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAGCTTTTGACTGGAAGAAAATCTTTAGACAAACTAAGACCAGCTAGAGAGCAAAACCTAACAGAATGGGCTCTTCCTTTGCTCAAAGAAAAGAAGAAAGTGTTGAATATTATAGATCCAAGACTAGACGGTAACTATCCAGTAAAAGGAGCTCATAAGGCTGCAATGCTTGCATATCATTGTTTGAACAAGAATCCAAAAGCAAGGCCTCTAATGAGAGATATTGTTGATTCATTGGAGCCTTTGACAACATATAGTGAGGCCCCTATTGAAAAAACATTTACTATAATCACTGAGGTTGCTGAAACTGATGTTAAAAAGAAAGAAGCAAAATGA 1149 0.3768 MGNCWFRESSDYRVSSNAKPEQNQVAVKERYEHDDCKLPSNPKEVEDLRRDSAANHLIAFTYDELKIITGHFRPDRVLGGGGFGSVYKGFISEELREGLPSIPVAVKVHDGDNSHQGHREWLAEVIFLGECSHPNLVKLIGYCCENEHRVLVYEYMARGSVENNLFSKILLPLPWSIRMKIAFGAAKGLAFLHEAEKPVIYRDFKTSNILLDLDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELLTGRKSLDKLRPAREQNLTEWALPLLKEKKKVLNIIDPRLDGNYPVKGAHKAAMLAYHCLNKNPKARPLMRDIVDSLEPLTTYSEAPIEKTFTIITEVAETDVKKKEAK 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05265 382 ProSitePatterns Protein kinases ATP-binding region signature. 78 107 IPR017441 GO:0005524
Vivi5g05265 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Vivi5g05265 382 PANTHER OS01G0588500 PROTEIN-RELATED 31 353 - -
Vivi5g05265 382 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Vivi5g05265 382 Gene3D Phosphorylase Kinase; domain 1 42 155 - -
Vivi5g05265 382 FunFam Probable serine/threonine-protein kinase PBL8 156 369 - -
Vivi5g05265 382 Coils Coil 369 382 - -
Vivi5g05265 382 ProSiteProfiles Protein kinase domain profile. 72 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05265 382 Gene3D Transferase(Phosphotransferase) domain 1 156 374 - -
Vivi5g05265 382 FunFam Serine/threonine-protein kinase BIK1 39 155 - -
Vivi5g05265 382 Pfam Protein tyrosine and serine/threonine kinase 75 350 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05265 Vivi-Chr5 154680311 154684166 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05265 39 361 Glycoside Hydrolase AT3G07070 48.949 1.84e-102 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi5g05265 PK_Tyr_Ser-Thr 3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05265 - - psat:127105028 738.413