Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05253 ATGGAAAACATTGCCGCGCAATTGAAGCGCGGCATCTCGCGCCAATTCTCCTCCGGTTCGTTACGGAAGACGTTAAGCCGGCAATTCACGCGTCAGGCTTCGCTCGATCCGCGCCGGAACAATCTCCGATTTAGTTTCGGTCGTCAATCGTCGCTTGATCCGATCCGGCGGAGTACTAGCGATGATCAGCCGGAACTCACCGTGCCGGAGAATCTTGACTCCACCATGCAGCTTCTGTTCATGGCTTGCCGTGGTGACGTTAAAGGTGTCGAGGATTTGCTTAACGAAGGCATCGATGTTAATAGCATTGATCTCGATGGACGTACGGCTCTTCATGTTGCTGCCTGTGAAGGTCATGTTGATGTTGCTAAATTATTGCTCAGCCGGAAGGCTAACCTCGACGCTCGTGATCGTTGGGGCAGTACGGCAGCTGCTGATGCTAAATATTATGGAAATACAGAAGTTTATTATATGTTGAAGGCGCGTGGAGCAAAAGTGCCGAAAACCAGGAAGACCCCAATGACTGTTGCAAATCCTCGTGAAGTTCCTGAATATGAACTCAATCCATTAGAACTACAAGTTCGGAAGAGTGATGGTATTTCAACGGGGACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAGATACTTGATAAAGACAGTTATTCAGATCCTGATACAATAAACACTTTCAAACATGAGCTCACATTATTGGAAAAGGTGCGACATCCTAATGTGGTCCAGTTTGTTGGAGCTGTCACCCAAAACATACCTATGATGATTGTTCGAGAGTACCATGCTAAGGGTGACTTAACAGGTTATATTCAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGGTTTTCTCTTGATATTGCTAGGGGCATGAATTATCTTCACGAATGCAAACCAGATCCTATTATCCACTGTGACTTAAAGCCAAAAAATATTTTGCTGGATAATGGAGGACAACTGAAGGTAGCTGGATTTGGCACTGTGAGGTTTTCACTTATCTCACCTGACAAAGCAACGTTAGTACAACCCGAGGCCAACATTGACCCTTCAAGCTTGTACGTGGCACCAGAGGTTTACAATGGTGATGTGTTTGATAGAAGTGTGGATGCATATGCTTTTGGTCTCATTGTATATGAGATGATAGAGGGTGTACCAGCCTTCCATCCCAAGTCCGCAGAGGAAGCTTTAAAAATGATGTGTTTGGAAGGGAAGAGACCGCAATTCAAGATCAAAACAAAAAGTTATCCTCCCGATTTGAAAGAGTTAATTGAGGAGTGTTGGGATCCAGAACCTGTTGTCAGACCAACTTTTTCTCAGGTTATTGCCCGGTTGGACAGAATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCTTGGAAATAA 1428 0.4447 MENIAAQLKRGISRQFSSGSLRKTLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSTSDDQPELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHVAACEGHVDVAKLLLSRKANLDARDRWGSTAAADAKYYGNTEVYYMLKARGAKVPKTRKTPMTVANPREVPEYELNPLELQVRKSDGISTGTYQVAKWNGTKVAVKILDKDSYSDPDTINTFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVREYHAKGDLTGYIQKKGRLSPSKVLRFSLDIARGMNYLHECKPDPIIHCDLKPKNILLDNGGQLKVAGFGTVRFSLISPDKATLVQPEANIDPSSLYVAPEVYNGDVFDRSVDAYAFGLIVYEMIEGVPAFHPKSAEEALKMMCLEGKRPQFKIKTKSYPPDLKELIEECWDPEPVVRPTFSQVIARLDRIVANCSKQGWWKDTFKLPWK 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05253 475 Gene3D - 45 185 IPR036770 -
Vivi5g05253 475 FunFam Integrin-linked protein kinase 1 47 185 - -
Vivi5g05253 475 SMART ANK_2a 74 102 IPR002110 GO:0005515
Vivi5g05253 475 SMART ANK_2a 106 135 IPR002110 GO:0005515
Vivi5g05253 475 ProSiteProfiles Ankyrin repeat region circular profile. 106 138 - -
Vivi5g05253 475 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 140 456 - -
Vivi5g05253 475 PIRSF ILK 8 474 - -
Vivi5g05253 475 FunFam serine/threonine-protein kinase STY46-like 187 270 - -
Vivi5g05253 475 Gene3D Transferase(Phosphotransferase) domain 1 271 471 - -
Vivi5g05253 475 FunFam Integrin-linked protein kinase family 270 469 - -
Vivi5g05253 475 Pfam Protein tyrosine and serine/threonine kinase 202 453 IPR001245 GO:0004672|GO:0006468
Vivi5g05253 475 SUPERFAMILY Protein kinase-like (PK-like) 205 453 IPR011009 -
Vivi5g05253 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Vivi5g05253 475 CDD STKc_MAP3K-like 200 453 - -
Vivi5g05253 475 Gene3D Phosphorylase Kinase; domain 1 186 269 - -
Vivi5g05253 475 SUPERFAMILY Ankyrin repeat 75 175 IPR036770 -
Vivi5g05253 475 SMART serkin_6 194 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05253 475 Pfam Ankyrin repeats (3 copies) 80 166 IPR002110 GO:0005515
Vivi5g05253 475 ProSiteProfiles Ankyrin repeat profile. 106 138 IPR002110 GO:0005515
Vivi5g05253 475 ProSiteProfiles Protein kinase domain profile. 190 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05253 Vivi-Chr5 154279830 154286377 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05253 1 474 MAP Kinase Kinase Kinase AT2G43850 78.033 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-5 Vivi5g05253 PK_Tyr_Ser-Thr 3.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05253 - - gmx:100810411 880.167