Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05243 ATGGATCATAGTCAAGGTGGTGGTGAAAAGGTTCCAAACAAGTCTCAAAAGGAACATGAAAATTCTAACAAAGAAACAGTTTTCTTACACGGTGACTTAGATTTATTCATCATAGAAGCAAAATCTCTTCCGAATCTAGATTTATCAACTGAAGCAGTTAGGAAATGTCTCACTATGGGAAATAGTTGCTCACCGCCTTTTGTAAAAGGACTCAAAACTCACTCAGGAAAAGATAAGATCATAACAAGTGATCCTTATGTATCTGTTTGTTTAGCCGGTGCAACTATAGCGCAAACAAGAGTTATTCCGAATTGCGAAAACCCTTTATGGGATGAGCATTATACTGTTCCTGTTGCTCATCCTGTTCAGAAAGTCGAGTTTTTAGTAAAAGATAATGATATTCTCGGTGCTGAACTCATCGGAGTTGTGGAAATACCTATTCAGAAGATACTTTCGGGTAACACTGTGAATGATTGGTTTCCGATTATTGGTCAATACGGAAACTGCTTAAAACCTTATCCTGAATTGCATATTTCAATTCAGTATAAGCCAATTGGCAGTGGTAATAAGAAAAAGGGAAGTGCTGGTTTCGGTGTTCCTGATACATATTTTCCGCTTAGGATAGGCGGGAATGTCACTCTTTATCAAGATGCGCATGTACCGGACGGTATGCTACCAGAGATTGAACTTGAAGATGGAAAAATGTTTCAGCATAGTAAATGTTGGGAGGATATTTGTCACGCGATTTTGGAAGCTCATCATATGATATACATTATTGGATGGTCGATTTTTCACCCTGTGAAGCTTGTTCGCGAGCCTACCAAACCATTGCCTTCTGGTGGAGAGCTCTCACTTGGAGAGTTGTTGAAGTACAAGTCACAAGAAGGGTTAAGAGTTGTTATGTTGATTTGGGATGATAGAACTTCACATGACAAGTTTCTTTTGAAGACAGATGGTGTGATGCAGACTCATGATGAAGAAACTAAAAAGTTTTTTAAACATTCAACCGTTCATTGTATATTATCTCCGCGTTATGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGTTGTTGGAACGCTCTTTACGCATCACCAGAAATGTGTGCTTTTAGACACTCAAGGTTCTGGGAATAATCGGAAAATAACCGCGTTTATCGGTGGTCTGGATCTATGTGATGGCAGATATGACACACCCGAGCATAGGATTTTTCATGATCTTGATACCGTCTTTCAAAATGATTTTCATAATCCTACATTTCAATTAAATTCTAATTCTTGTGCGCCAAGGCAACCGTGGCATGACTTACATTGCAAAATTGAAGGTCCGGCTGCATATGATATACTGACCAATTTTGAACAAAGAACAAGGAAGGCGAAAAAATGGCGCGATTTCAGACTCCGAAAGGTGACAAATTGGCATGATGATGCTTTGCTAAGGTTAGACCGTATTTCGTGGATTGTCAAACCATCTTTAGGCCCTGATGGCGATAAATCCGTTCGTGTGACAGAAGCAACCGATCCCGAGAGTTGGCATGTACAGGTATTTCGGTCCATAGATTCAGGATCGGTGAAAGGATTTCCAAAGGATTTCGACAAAGCAAAGGCTCAGCATCTTTTATGTGGCAAAAATTTAAAAGTTGATCAAAGCATCCATGTGGCTTACGTAAAGGCAATAAGATCCGCTCAACGCTTCATTTATATCGAGAATCAATATTTTCTTGGCTCTTCATATCATTGGCCTTCATATAAAAATGCAGGCGCAAACCACTTGGTTCCGATGGAGATAGCATTAAAAATTGCGAGCAAGATAAGCGCGAACGAACGATTTTCTGTGTATATAGTTATACCAATGTGGCCAGAAGGAGTACCAACTAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAGGGACAGACAATGTCTATGATGTACAAAATTGTTGCAGATGCACTTGCAAAAGCAGGTCTATCTGAATGTTATCATCCGCAAGATTATCTCAATTTTTATTGTCTTGGAAAGAGAGAACCTCAATCGCGTGAGACTACATCGACGCCAACTCAATCATCAGAAAATCGTGCCTTGGTATCTGTTAAAAAATACAGACGTTTTATGATTTATGTTCATGCAAAAGGAATGATAGTTGATGATGGTTATGTAATAATTGGATCAGCAAATATTAATCAGAGATCAATGGATGGATCAAGGGACACGGAAATAGCCATGGGGGCTTATCAACCAAAATATACATTAGCAGAAAAGAACTCTCTTCCGCGTGGCCAGGTGTACGGATACAGAATGTCACTTTGGGCCGAGCACCTTGGTAGTCTTGATGAGACATTTAGTGAACCTCACACGTTGGAATGTGTACGACATGTGAATAGAATTGCTAGAAAAAATTGGAGCTCATATGTGTCTGAAGAAGGTCATCATCAAATGAGGGGAAGCTTGATGCATTATCCAGTTCATGTTAGCAGAAATGGAAAAGTTAGTTCATTGGAGGGTCATGAGTCTTTTCCTGATGTTGGTGGCAAAATTCTTGGAGCACAAAATTCACTTCCGGATGCACTAACCACATGA 2577 0.3966 MDHSQGGGEKVPNKSQKEHENSNKETVFLHGDLDLFIIEAKSLPNLDLSTEAVRKCLTMGNSCSPPFVKGLKTHSGKDKIITSDPYVSVCLAGATIAQTRVIPNCENPLWDEHYTVPVAHPVQKVEFLVKDNDILGAELIGVVEIPIQKILSGNTVNDWFPIIGQYGNCLKPYPELHISIQYKPIGSGNKKKGSAGFGVPDTYFPLRIGGNVTLYQDAHVPDGMLPEIELEDGKMFQHSKCWEDICHAILEAHHMIYIIGWSIFHPVKLVREPTKPLPSGGELSLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCILSPRYASNKLSIFKQQVVGTLFTHHQKCVLLDTQGSGNNRKITAFIGGLDLCDGRYDTPEHRIFHDLDTVFQNDFHNPTFQLNSNSCAPRQPWHDLHCKIEGPAAYDILTNFEQRTRKAKKWRDFRLRKVTNWHDDALLRLDRISWIVKPSLGPDGDKSVRVTEATDPESWHVQVFRSIDSGSVKGFPKDFDKAKAQHLLCGKNLKVDQSIHVAYVKAIRSAQRFIYIENQYFLGSSYHWPSYKNAGANHLVPMEIALKIASKISANERFSVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIVADALAKAGLSECYHPQDYLNFYCLGKREPQSRETTSTPTQSSENRALVSVKKYRRFMIYVHAKGMIVDDGYVIIGSANINQRSMDGSRDTEIAMGAYQPKYTLAEKNSLPRGQVYGYRMSLWAEHLGSLDETFSEPHTLECVRHVNRIARKNWSSYVSEEGHHQMRGSLMHYPVHVSRNGKVSSLEGHESFPDVGGKILGAQNSLPDALTT 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05243 858 SMART C2_3c 32 159 IPR000008 -
Vivi5g05243 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 703 730 IPR001736 GO:0003824
Vivi5g05243 858 Gene3D Endonuclease Chain A 520 755 - -
Vivi5g05243 858 PANTHER PHOSPHOLIPASE D 23 848 IPR015679 -
Vivi5g05243 858 SUPERFAMILY Phospholipase D/nuclease 201 464 - -
Vivi5g05243 858 MobiDBLite consensus disorder prediction 1 22 - -
Vivi5g05243 858 Pfam PLD-like domain 557 739 IPR025202 -
Vivi5g05243 858 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 29 185 IPR035892 -
Vivi5g05243 858 PIRSF PLD_plant 17 858 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vivi5g05243 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 360 395 IPR001736 GO:0003824
Vivi5g05243 858 Gene3D Endonuclease Chain A 231 477 - -
Vivi5g05243 858 Pfam Phospholipase D C terminal 777 848 IPR024632 -
Vivi5g05243 858 Gene3D C2 domain 9 185 IPR035892 -
Vivi5g05243 858 Pfam Phospholipase D Active site motif 361 395 IPR001736 GO:0003824
Vivi5g05243 858 ProSiteProfiles C2 domain profile. 11 160 IPR000008 -
Vivi5g05243 858 Pfam C2 domain 31 162 IPR000008 -
Vivi5g05243 858 FunFam Phospholipase D delta 232 477 - -
Vivi5g05243 858 SMART pld_4 360 395 IPR001736 GO:0003824
Vivi5g05243 858 SMART pld_4 703 730 IPR001736 GO:0003824
Vivi5g05243 858 SUPERFAMILY Phospholipase D/nuclease 549 785 - -
Vivi5g05243 858 CDD C2_plant_PLD 26 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05243 Vivi-Chr5 153994997 154000282 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05243 25 857 Phospholipase D Gene Family (Wang group) AT2G42010 53.472 0.0 916
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05243 K01115 - gmx:100779740 1486.09