Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05240 ATGGAAAAGTATGAAGAAGTGAAGGATATTGGATGTGGAAATTATGCAGCTGTGAAGCTTATTAGGAACAAAGAAACAAAAGCTCTTTTTGCAGTCAAATACATCTCACGAGGCCACAAGGTTGATGAAAGGGTGGCAAGGGAAATTATAAATCATAGAAGTCTTTGTCATCCAAATATTATTCAGTTCAAGGAGGTGTTCTTGACTCCAAGAGATATTGCAATAGTTATGGAGTATGCAACTAATGGAGATCTATTTGATTATGTTTCCAGTCATGGGAAATTAAATGAAGACGAGGCTCGCCATTTCTTCCAACAACTCATTTCAGGGGCTAGTCATTGTCATGACATGGAAATATGTCACAGAGACTTGAAGTTGGAGAACACTTTATTAAATGGAAAGCTTATTAAAATTTGTGATTTTGGCTATTCTAAGTCATATCTACTTCATTCAAGACCCAAATCCATGATTGGAACTCCATCCTATATTGCACCAGAGATTTTTTCTCGTAAAGAATATGATGGAAAGTTAGCAGATGTATGGTCATGTGGAGTGATACTTTACATAATGTTAGTGGGAGAATTTCCATTTGGGGACCAAAAAGATCTCCACAATCTCAAGAAAATAATGAATCAAATTATACTTGCTCAATACAAGATTCCAGACACCATTCACATGTCTCAAGATTGTAGAAATTTATTATCTCGCATTTTTGTTGCAAATCCAATGAAAAGAATCAGCATGAGGGAAATTAAGTCTCACCCATGGTTTTTAGAGAAGTTGCCAGAGGAATCCACAAAAGAGGGTGAAGATGTCGACTACATAAAAGAAAATTCAATCACTTGTCTTCAAAGTGTAGAGGAGATAATGAGAATTGTTGATGAGGCTAAAACTATAGCTTCAACTTCAAGTTTGGATCAATTGGGGGATTTACTTGAGGCTTTCAAGATGTAA 954 0.3574 MEKYEEVKDIGCGNYAAVKLIRNKETKALFAVKYISRGHKVDERVAREIINHRSLCHPNIIQFKEVFLTPRDIAIVMEYATNGDLFDYVSSHGKLNEDEARHFFQQLISGASHCHDMEICHRDLKLENTLLNGKLIKICDFGYSKSYLLHSRPKSMIGTPSYIAPEIFSRKEYDGKLADVWSCGVILYIMLVGEFPFGDQKDLHNLKKIMNQIILAQYKIPDTIHMSQDCRNLLSRIFVANPMKRISMREIKSHPWFLEKLPEESTKEGEDVDYIKENSITCLQSVEEIMRIVDEAKTIASTSSLDQLGDLLEAFKM 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05240 317 PANTHER SERINE/THREONINE KINASE 2 284 - -
Vivi5g05240 317 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vivi5g05240 317 Gene3D Transferase(Phosphotransferase) domain 1 80 263 - -
Vivi5g05240 317 ProSiteProfiles Protein kinase domain profile. 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05240 317 FunFam Serine/threonine-protein kinase SRK2A 80 265 - -
Vivi5g05240 317 SMART serkin_6 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05240 317 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi5g05240 317 SUPERFAMILY Protein kinase-like (PK-like) 1 265 IPR011009 -
Vivi5g05240 317 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vivi5g05240 317 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05240 Vivi-Chr5 153979895 153984504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05240 3 257 CBL-interacting serine-threonine protein kinases AT2G26980 39.925 1.38e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi5g05240 Pkinase 9.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05240 K14498 - pvy:116133499 427.943