Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05238 ATGAATCCTAGTTTGGTTTTTCTCTTGTTCTTTCTCATCATACTCATAGATTCATCAAACTCAACAACAACATGTCCAGTGTCTATGAAATTTGTCCAAACAGTCCCTTGGAATTCTTCACTATGTCATAACTTCAAACCCTCACAAACCAAAACAGAAACAAAACAATCTCTTTGTTGTCAAACTCTCTTATCTCTCTTTGGCATAGCACTTGCTGAGAATCTCAAAAGACACTCCATTTTCCATTTCTCCAACACCTCTACCTCACAATCTTGCTTACAAGATTACCAATCTAGTCTCACTTCAATCTCACTTCCTAACAACCTTGTTTCCTCATGTTTTGATCCATCTCAGTTTGTTTCTACCCCCGACACATGTGTTCATATTCAATCTGAACAAGATTGGTTTAACAAAGTTGATTCGACAAGTTTAGCACTTCTTGATGATGTTTGTAAACCAGATTTAACAGATCATGATCATTGTAATGCTTGTCAAAGGCAAGGGGATTTGGTTCATCAGATGCTGACTCGAATGGATGGTAATGGTTCTCATTCTCAAGATTGTTTTTACTTTACTATACTTTATATTGCTGGGATTGTGAATAGGTTTGGTCCTCAGAGTAATGGTGTTCTGGCTTGTATTCTTATTTTGTTGGTTGTGAAAGAGGATTCTGAAAAGGAAAATCATCATGTTCTTGTCATTGGGTTGGTTTCAGCTTCTTTTGTGTTTGTGGCTTTTTTGTTAGGGTTGTTGTATTTTTGGTATACATGGTGGGTGAAGAGGAAAAAGAATGATAATTTGTTATCACATAATGGTGGTTCGATGGAACCGAGTTTTAGTTTAAGAGTTAGGCCTAAAAGCGGGTTGATTTGGTTTGATTTTAAGGATCTTTTGAAGGTAACTGATAATTTTTCGTCGGGAAATTTTGTTGGGAGAGGCGGGTTTGGTTCGGTTTATAAGGGGGTTTTACCGGACGGGACAGTTGTTGCGGTTAAAAGGATTGAAGAGTCTGATTATCAAGGAGATGTTGAGTTTTACAGAGAGGTTGGGATTGTTAGTAGCTTGAAGCACCGCAATTTGGTGACGATTAGAGGGTGTTGTGTGGTTGGTGAGGATGAGAATTCGGAGTACATTGGAAAGTATCTTGTTTATGATTACATGCCAAATGGTAATCTTAAAGACCATCTTTTTCCAGATACGGATAGCGAAAATGCAAAGCGAGTACTAACTTTGGCGCAAAGAAAGAACATAATCTTGGATGTGGCGAACGCGTTGGTTTATTTGCACTTTGGAGTTAAACCTCCTGTTTACCATAGAGATATCAAAGCCACAAATATACTACTTGATGCAGGTATGAGGGCAAGGGTTGCAGATTTCGGGCTGGCGAGACAGGACTACAGTCAAAATAGGTCTCAGTTAAATACAAGAGTAGCCGGAACTCACGGATATCTTGCTCCCGAGTACGCGCTTTATGGTCAGCTAACTGAGAAAAGTGACGTCTACAGCTTTGGCATTGTTGTTCTTGAGATAATGTGTGGAAGAAAAGCTCTTCAGCTGTCATCGTCAGGAGAGCCTAATTTCTTGATCACGGATTGGGTTTGGTCGTTGATAAAATCCGGAAACATGATTAAGGCTTTGGATGGTTCTATCTTAATGGATGGAAATTCCAATAGAAGCGTAATGGAGAGATTTTTGTCGGTTGGAATTTTGTGTTCTCATGTATTGGTTGCTTTAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGGGACATTGAAGTTCCATCGATTTCAAATATGTCAATGAGTCCGGGGAATCACATGTTTGCGCGACGTGAATCAACTTGA 1851 0.3917 MNPSLVFLLFFLIILIDSSNSTTTCPVSMKFVQTVPWNSSLCHNFKPSQTKTETKQSLCCQTLLSLFGIALAENLKRHSIFHFSNTSTSQSCLQDYQSSLTSISLPNNLVSSCFDPSQFVSTPDTCVHIQSEQDWFNKVDSTSLALLDDVCKPDLTDHDHCNACQRQGDLVHQMLTRMDGNGSHSQDCFYFTILYIAGIVNRFGPQSNGVLACILILLVVKEDSEKENHHVLVIGLVSASFVFVAFLLGLLYFWYTWWVKRKKNDNLLSHNGGSMEPSFSLRVRPKSGLIWFDFKDLLKVTDNFSSGNFVGRGGFGSVYKGVLPDGTVVAVKRIEESDYQGDVEFYREVGIVSSLKHRNLVTIRGCCVVGEDENSEYIGKYLVYDYMPNGNLKDHLFPDTDSENAKRVLTLAQRKNIILDVANALVYLHFGVKPPVYHRDIKATNILLDAGMRARVADFGLARQDYSQNRSQLNTRVAGTHGYLAPEYALYGQLTEKSDVYSFGIVVLEIMCGRKALQLSSSGEPNFLITDWVWSLIKSGNMIKALDGSILMDGNSNRSVMERFLSVGILCSHVLVALRPTILDALKMLEGDIEVPSISNMSMSPGNHMFARREST 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05238 616 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vivi5g05238 616 FunFam Receptor-like serine/threonine-protein kinase At4g25390 269 386 - -
Vivi5g05238 616 Gene3D Transferase(Phosphotransferase) domain 1 387 600 - -
Vivi5g05238 616 SUPERFAMILY Protein kinase-like (PK-like) 284 590 IPR011009 -
Vivi5g05238 616 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 76 597 - -
Vivi5g05238 616 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 387 597 - -
Vivi5g05238 616 ProSiteProfiles Protein kinase domain profile. 304 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05238 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Vivi5g05238 616 Pfam Protein kinase domain 307 522 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05238 616 SMART serkin_6 304 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05238 616 CDD STKc_IRAK 310 591 - -
Vivi5g05238 616 Pfam SPARK 20 189 IPR043891 -
Vivi5g05238 616 Gene3D Phosphorylase Kinase; domain 1 275 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05238 Vivi-Chr5 153969128 153971319 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05238 18 600 Receptor kinase-like Gene Family AT1G11050 53.231 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vivi5g05238 Pkinase 1.1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05238 - - gmx:100788367 754.592