Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05237 ATGGAGTTCATTCTTGTGCTTTTCATGATCTTTGTTGTGTCTACAAATTCAAACTCAGTAGCAGCCTCTCCCTCCACCAACAACTCTCTGTGTCCAGTTGACATGAATTATGTATTAACAGTTCCTTGGAACACCTCTACCTGTCTTACCCAAAACAAACCACAAACAAGTCTATGTTGTCAAACTTTGCTGTCACTTTTTGGTATAGCACTAGCACAAAACCTCAACAAGAATTCTCTTTTCCAACTCCCAAACCTATCTACCTCCACCTCATGCCTTCAAGACTTCCAAACTAAGCTCACTTCCCTTTCACTTCACAACGACCTCGTCTCTTCATGCTTTGATCCACTTCAATTTGTTATCACTCCTAACATCTGTGCTCGTATTCAATCTAAGCAAGATTGGTTCAGCAGCGTCGGTCCTGAATCATTGTTCAACACTTCTTGTAAACAAGACCTTAGTGTTTCTACCAACTGTGATGCATGTGTTGATCAGGGACTCAAGGTTCAAGAGAAGCTGAATCAAATTGATGGTAATAGTTCACATTCTAAAGATTGCTTTTACTTCACTATACTTTACATTGCCGGAGTTGTGAATCAGTTTGGCCCTGAAAACATCGGTGTTATGTCTTGTATTCTTGAACTGCCTCTTAACTCTCAAGTGGTTTCCAGAAAAAAGAGCCATCATGCACTTGTTTTTGGGTTAATCGGAGCTTCAGTTGCATTCATGGTTATCATGTTTTCTTTGCTTGGCTTCTATTTTTGGCACACTGGTTGGTTAAAGAGAAAAAGGACCGGTAATTTTTTAAGCCATGCTGATCCAAGGGAACAACGGTCCATCCTAAGATTTAGACCAAACACAGGGTCAATTTGGATCAAATTTGATGAACTTGTGAAGGCCACTGACAATTTTTCACTCCAAAACTTTATCGGTAGAGGTGGATTTGGGATGGTTTACAAGGGGATTCTATCAGACGGCACAACTGTCGCTGTTAAAAGGATCGAAGAATCTGATTTTCAAGGGGATGATGAATTCTACACTGAAGTCGAAATTATTAGCAAGTTGAAGCACCGCAATCTAGTGCCGCTTAGAGGCTGTTGTGTGGTCGATGAGGATCATAATCAAGAACACAGAAATAGGTATCTTGTCTACGATTATATGCCTAATGGTAACCTTGAAGATCATCTCTTTCCATCCATGGTCAACGAAAACGAAAATAAATTGTTGACTTGGCCTCGAAGAAAAAACATAATCTTAGATGTGGCAATTGGGTTGGTTTATTTGCACTTTGGAGTCAAACCTGCTATTTATCATAGAGATATCAAAGCTACCAATATACTACTCGATGCGGAAATGAGAGCAAGGGTTGCAGATTTCGGACTGGCAAAAGAAAGCAGTGAAAGTAGGTCTCAGTTGAATACTAGAGTAGCCGGGACTTACGGATATCTTGCACCAGAATATGCGCTTTATGGTCAGTTAAGTGAGAAGAGTGATGTTTACAGCTTTGGTGTGGTTGTTTTGGAGGTTATGTGTGGAAGAAAAGCTCTTGAGTTGTCTTCATCAGGAACACCTAGTTTCTTGATCACGGATTGGGTTTGGTCGTTGATGAAAGCTGGAAATTTAGCAGAAGCTTTGGATGGTTCTATGTTGGTGGATGATGGGGAGTCCAATGGTAGAAATATAATGGAGAGGTTTTTGGTGGTTGGAATTTTGTGTTGTCATGTAATAGCTGATTCAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGGGACATTGAGGTTCCATCAATTCCAGATAGACCAATGACTCTTGAGAACCACATGTTTATCAATGGTGATTGA 1848 0.4026 MEFILVLFMIFVVSTNSNSVAASPSTNNSLCPVDMNYVLTVPWNTSTCLTQNKPQTSLCCQTLLSLFGIALAQNLNKNSLFQLPNLSTSTSCLQDFQTKLTSLSLHNDLVSSCFDPLQFVITPNICARIQSKQDWFSSVGPESLFNTSCKQDLSVSTNCDACVDQGLKVQEKLNQIDGNSSHSKDCFYFTILYIAGVVNQFGPENIGVMSCILELPLNSQVVSRKKSHHALVFGLIGASVAFMVIMFSLLGFYFWHTGWLKRKRTGNFLSHADPREQRSILRFRPNTGSIWIKFDELVKATDNFSLQNFIGRGGFGMVYKGILSDGTTVAVKRIEESDFQGDDEFYTEVEIISKLKHRNLVPLRGCCVVDEDHNQEHRNRYLVYDYMPNGNLEDHLFPSMVNENENKLLTWPRRKNIILDVAIGLVYLHFGVKPAIYHRDIKATNILLDAEMRARVADFGLAKESSESRSQLNTRVAGTYGYLAPEYALYGQLSEKSDVYSFGVVVLEVMCGRKALELSSSGTPSFLITDWVWSLMKAGNLAEALDGSMLVDDGESNGRNIMERFLVVGILCCHVIADSRPTILDALKMLEGDIEVPSIPDRPMTLENHMFINGD 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05237 615 ProSitePatterns Protein kinases ATP-binding region signature. 310 332 IPR017441 GO:0005524
Vivi5g05237 615 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 16 603 - -
Vivi5g05237 615 Pfam Protein kinase domain 307 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05237 615 Gene3D Transferase(Phosphotransferase) domain 1 387 609 - -
Vivi5g05237 615 Gene3D Phosphorylase Kinase; domain 1 268 386 - -
Vivi5g05237 615 ProSitePatterns Serine/Threonine protein kinases active-site signature. 436 448 IPR008271 GO:0004672|GO:0006468
Vivi5g05237 615 ProSiteProfiles Protein kinase domain profile. 304 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05237 615 CDD STKc_IRAK 310 592 - -
Vivi5g05237 615 SUPERFAMILY Protein kinase-like (PK-like) 282 591 IPR011009 -
Vivi5g05237 615 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 387 598 - -
Vivi5g05237 615 SMART serkin_6 304 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05237 615 FunFam Receptor-like serine/threonine-protein kinase At4g25390 269 386 - -
Vivi5g05237 615 Pfam SPARK 27 187 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05237 Vivi-Chr5 153963421 153966440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05237 17 611 Receptor kinase-like Gene Family AT1G11050 58.902 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Vivi5g05237 Pkinase 1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05237 - - gmx:100788367 805.823