Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05227 ATGCTTGCTGTAGAAATGAGAGAGAAAACGAGGAACATGTTTGCTAGCCTCCATGCTTTGCTTCCAGATCTACCTTCTAATGTTGATAAGTTAACCATTGTGGATGAAGCAATAAAGCAAATAGAAAATCTACAACAGATTGTGGAAAATCTAGAAAATAAGAAGCAAGAAATGCTTAAACCTATATCCCCGTTTGTAAGTGGGTCATCATCTGTGATTAACTCACCATTGAATTCCTATGAATCAAGGGAAACTATAATAGTTGACCAAGGATCCTCTAGTTATAATAATAAATTGCCTATCAGTGCAATTGCAACTTCAAATGCAATATCACTAGATGCACCTCCATCACAACAAGTAGCTTTTCAAACTTGGTCTTCTCAAAATGTTGTGTTGAACATTTGTGGGGGTGAAGCACAATTTTGCATATGTGCAACTAAGAAGCCGAGTCTCTTAACAACAATTGCTTTTGTGTTGGAGAAACATATGATTAATGTTGTATCTGCCAACATTATGTCCAAAGGAAATGGAAATGTGTGCATGATTTTGATTCATGCAAGCCAGTGTTCAAATGACACAAATTCCATGGAGGAAACCTACAAGGAAGCAGCTGGAGAAATTATGATGCGGATATCTTAA 639 0.3662 MLAVEMREKTRNMFASLHALLPDLPSNVDKLTIVDEAIKQIENLQQIVENLENKKQEMLKPISPFVSGSSSVINSPLNSYESRETIIVDQGSSSYNNKLPISAIATSNAISLDAPPSQQVAFQTWSSQNVVLNICGGEAQFCICATKKPSLLTTIAFVLEKHMINVVSANIMSKGNGNVCMILIHASQCSNDTNSMEETYKEAAGEIMMRIS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05227 212 Gene3D - 5 63 IPR036638 GO:0046983
Vivi5g05227 212 CDD bHLH_AtbHLH_like 7 52 IPR045239 -
Vivi5g05227 212 Coils Coil 34 61 - -
Vivi5g05227 212 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 7 66 IPR036638 GO:0046983
Vivi5g05227 212 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 7 209 IPR044278 GO:0003700|GO:0006355|GO:0009960
Vivi5g05227 212 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 44 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05227 Vivi-Chr5 153856243 153857779 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05227 5 173 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 36.170 4.15e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05227 - - psat:127102561 295.049