Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05223 AAATTGGTGACTAACATTGTTTCATCACCAGCTACTCCACTATGGCGCCAAGGACCAACAAAGAAGCCAGTATTGTGCAATGCATGTGGGACAAGATATAGACTTAGGGGAAATCTTGACAACTATTTTCCAAAGCATTGTCCTCCAAATGAACTCAGCTATAGAAACAATGATTTCAGTGAAAATTCATCAACCAATGTTTTAGATTCAGATGATGATGAAAAAGATTTTTACCTACACAAGTCTAGAATTCCTTCAAAGAAGCATAATCTGAAGTTTGTTTATAAGAGGAAGACATCAATGGAGAAGTTTCATGAACAACTTCTCAACGAGCTGAAATATGAGGATATCCCAGATGAGTCATCTCCAGAAGAAGTTTTGTTGTTTGAAAATGTCAATTGTTTCATACCTTCAAATGAAATTGGGGTTGGAGCAATTCTTCTTAAACAAGATGGTATTTCAAAGAAATAA 471 0.3524 KLVTNIVSSPATPLWRQGPTKKPVLCNACGTRYRLRGNLDNYFPKHCPPNELSYRNNDFSENSSTNVLDSDDDEKDFYLHKSRIPSKKHNLKFVYKRKTSMEKFHEQLLNELKYEDIPDESSPEEVLLFENVNCFIPSNEIGVGAILLKQDGISKK 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05223 156 SMART GATA_3 7 60 IPR000679 GO:0006355|GO:0043565
Vivi5g05223 156 Gene3D - 8 67 IPR013088 GO:0006355|GO:0008270
Vivi5g05223 156 ProSiteProfiles GATA-type zinc finger domain profile. 11 37 IPR000679 GO:0006355|GO:0043565
Vivi5g05223 156 PANTHER OSJNBB0038F03.10 PROTEIN 12 150 IPR044589 -
Vivi5g05223 156 Pfam GATA zinc finger 12 37 IPR000679 GO:0006355|GO:0043565
Vivi5g05223 156 CDD ZnF_GATA 12 37 IPR000679 GO:0006355|GO:0043565
Vivi5g05223 156 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 11 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05223 Vivi-Chr5 153664215 153664810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05223 11 46 C2C2-Gata Transcription Factor Family AT5G47140 66.667 1.12e-12 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi5g05223 GATA 1.1e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05223 - - vvo:131605769 327.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04813 5 147401300 147404744 Vivi5g05223 5 153664215 153664810 PCT
Vivi5g05223 5 153664215 153664810 Vivi5g05223 5 153664215 153664810 PCT