Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05217 ATGGCTTTGTTTTCTCATTCACTTCTTCATATTTATGCCTTAGTAATGATCCTAATTGTGCCCTTTGATTTCAACAACCTTTTGATTGGTGTATCATCAACCACTCTTAGCATCACCACAGACAAAGAAGCCTTAATCTCATTAATGTCTCAATTGAGTACTACCAATGACACTTCTAGTTCTAGTACTAGTTCTCATCCATTATCCTCTTGGAGCCATAATTCATCTCCTTGCAATTGGACCGGAGTCCTATGTGACAAGCATAGCCGAAGAGTGATTTCCTTAGATCTTTCAGGCTTTGGACTCTCGGGTAACTTGAGCCCTTATATAGGTAACATCTCCTCTCTTCAGTCCCTACAATTGCAGAATAACCAGCTCACAGGATTCATTCCTAACCAAATTACCAATCTGGACAGTTTGAGAGTTCTAAATATGAATTCTAACAGATTAGAAGGAATGCTTCCTTTAAACCTTACCTGCTTAAATAAGCTCGAGATTCTTGATTTGTCCTCAAACAAGATTGTAAGCAGAATTCCTGAAGACATCAGCAGCTTGAAAAAGCTGCAGGTCTTAAAACTTGGAAAGAATAGCCTCCATGGTACAATTCCAGCAGCTCTAGGAAATATTTCATCTCTGAGAAATATAAGTTTAGGCACCAACTCTCTTAGTGGCTGGATTCCTAGTGACTTAGGTAGGCTACACAATCTAATTGAGCTTGATCTCACTATTAACAATCTTACTGGGACTGTTCCATCTGTTGTATATAATTTGTCTTCTCTAGTTAATTTGGCCTTAGCTGCAAACTCCTTTTGGGGTGATATTCCGTATGATGTTGGTCATAAACTTCCCAAACTACTAGTGTTCAATTTTTGCTACAATAAATTCACAGGTAGAATTCCAGGGTCTTTGCACAACCTTACAAATATTAGGGTCATTCGCATGCTCTCTAACCTTTTGGAAGGAACGGTTCCGCCTGGTTTGGGAAATCTCCCATTTCTTCAACTGTATAATATTGGCCATAACAGGATAGTCAGCTCAGGAATCAAAGGCTTGGAGTTCATCACATCATTGGCAAACAGCACTCATTTGAACTTTCTAAACATTAATGGCAATATGCTAGAAGGTGACATTCCTGGAACCATTGGCAATCTCTCCAAGGATCTCTCAATTTTATACATGGGAGGGAATCGTTTCAATGGAAGTATTCCCTCTTCCATTGGTCGTCTTAGTGGCTTGAAGTCGTTTAACTTGAGCTACAATTCAATTAGTGGAGAGATTCCAAAGGAGTTAGGAAAGTTAGAGGAACTACAAGAGTTATATCTGACTGGAAATAAGATATCAGGAGCTATTCCAATCCCCCTTGGTAACTTAATAAAGTTAAACAAGATTGATTTGTCAAGAAATGAACTTGTTGGTAAAATACCATTCAGTTTTCAAAATTTTCAAAACCTGCTCTACATGGACTTATCTAGTAACAAACTCAATGGAAACATACCTGCGGAAATCCTCAACCTCCCAACTTTAAGCATTGTCTTAAACTTATCAAACAATTTTTTGAGTGGACCAATACCTCAATTTGGGAAATTAACTAGCATTGCCTCCATTGACTTTTCAAACAACCAATTGTATGGCACCATCTCCAGCTCAATAGGCAGTTGCTTGAGCTTGGAGAAATTGTTTTTGGCTAGGAATATGCTTTCAGGTTCCATTCCAAAAGAACTTGGAGATGTGAGAGCCTTGGAATCTTTGGACTTGTCCTCCAACCAACTCTTTGGACTCATTCCTATTGAACTTCAAAATCTGCATGCCCTTCAGCTTTTAAACCTCTCTTACAATGATTTAGAAGGAGCCATTCCTAGTGGTGGAGTTTTCCAAATTCTCTCTGCTGTCCACTTAGAAGGCAATAAAAAGCTATGCTTGAAATTTGCATGTGTGCCTCAAGTCCATAGAAGAGGACATGTCAGACTTTATATCATCATAGCTACAGTGGTAATATTTGTTGTACTATGTCTCACAATTGGCTTGCTACTACTATATATGAATTACCGAAAGGTGAAGATAACAGCAATAGAAGCATCTAAACAGCTAAAGCCACGGGCTCCATTGGTCTCTTATGACGAGCTTCGCTTGGCAACTGAGGAGTTCAGGGAAGAAAAATTATTAGGAACTGGGAGTTTTGGGTCAGTTTATAAAGGACAGCTATGTCAGGGAAACATTATAGCAGTGAAAGTACTTGACACACTAAGAACAGGTTCTTTAAAGAGTTTCTTTGCAGAGTGTGAGGCTATGAAGAACTCAAGGCACAGAAATCTTGTTAAGCTAATCACATCATGCTCTAGTGTTGATTTTAGAAATAATGATTTTCTGGCTTTGATCTACGAGTACTTAAGTAACGGGAGCTTGGAAGATTGGATTAAGGAGAGGAGAAAGCATGGAAATGGAAACGGTTTGAACCTTATGGAGAGACTAAATATAGCTATAGATGTTGCTTCTGCATTAGATTACCTGCACAATGACAGTGAAACTCCAATTGTGCACTGTGATATTAAGCCGAGTAACATTCTCCTGAATGAAGATATGACTGCAAAGGTTGGAGACTTTGGTTTGGCTAGGTTACTGATTCAAAGATCAAACAATCAATTTTCCATTAGTTCCACTAATGTCCTTAGAGGTTCAATCGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAAGCGTCTGCAGCAGGAGATGTATATAGTTTTGGGATAGTGATACTAGAGCTCTTCTCTGGGAAGAGTCCACAAGATGATTGCTTCAGTGGAGGCCTGAGCATAGCAAAATGGGTGCAATCAGCATTCAAAAACAAGACTGTTCACGTCGTTGACCCTCAGCTTCTATCCCTCATTTATGATGAGGACTCTGCTAGAGACACCAATCTACAAATTCAGTGTGTGGATGCAATTATGGGAGTTGGCATGTCCTGCACTACAGACAATCCACATGATCGCATTGGCATTAGAGCTGCTGTTTGCCAACTAAAAGCTGCCATGGACTTTCTTCTGAATAAAATCTGA 3057 0.3939 MALFSHSLLHIYALVMILIVPFDFNNLLIGVSSTTLSITTDKEALISLMSQLSTTNDTSSSSTSSHPLSSWSHNSSPCNWTGVLCDKHSRRVISLDLSGFGLSGNLSPYIGNISSLQSLQLQNNQLTGFIPNQITNLDSLRVLNMNSNRLEGMLPLNLTCLNKLEILDLSSNKIVSRIPEDISSLKKLQVLKLGKNSLHGTIPAALGNISSLRNISLGTNSLSGWIPSDLGRLHNLIELDLTINNLTGTVPSVVYNLSSLVNLALAANSFWGDIPYDVGHKLPKLLVFNFCYNKFTGRIPGSLHNLTNIRVIRMLSNLLEGTVPPGLGNLPFLQLYNIGHNRIVSSGIKGLEFITSLANSTHLNFLNINGNMLEGDIPGTIGNLSKDLSILYMGGNRFNGSIPSSIGRLSGLKSFNLSYNSISGEIPKELGKLEELQELYLTGNKISGAIPIPLGNLIKLNKIDLSRNELVGKIPFSFQNFQNLLYMDLSSNKLNGNIPAEILNLPTLSIVLNLSNNFLSGPIPQFGKLTSIASIDFSNNQLYGTISSSIGSCLSLEKLFLARNMLSGSIPKELGDVRALESLDLSSNQLFGLIPIELQNLHALQLLNLSYNDLEGAIPSGGVFQILSAVHLEGNKKLCLKFACVPQVHRRGHVRLYIIIATVVIFVVLCLTIGLLLLYMNYRKVKITAIEASKQLKPRAPLVSYDELRLATEEFREEKLLGTGSFGSVYKGQLCQGNIIAVKVLDTLRTGSLKSFFAECEAMKNSRHRNLVKLITSCSSVDFRNNDFLALIYEYLSNGSLEDWIKERRKHGNGNGLNLMERLNIAIDVASALDYLHNDSETPIVHCDIKPSNILLNEDMTAKVGDFGLARLLIQRSNNQFSISSTNVLRGSIGYIPPEYGWGEKASAAGDVYSFGIVILELFSGKSPQDDCFSGGLSIAKWVQSAFKNKTVHVVDPQLLSLIYDEDSARDTNLQIQCVDAIMGVGMSCTTDNPHDRIGIRAAVCQLKAAMDFLLNKI 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05217 1018 Gene3D Transferase(Phosphotransferase) domain 1 796 1014 - -
Vivi5g05217 1018 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 243 350 - -
Vivi5g05217 1018 Pfam Leucine Rich Repeat 580 601 IPR001611 GO:0005515
Vivi5g05217 1018 FunFam Inactive leucine-rich repeat receptor-like protein kinase 355 647 - -
Vivi5g05217 1018 Pfam Leucine rich repeat 388 446 IPR001611 GO:0005515
Vivi5g05217 1018 Pfam Leucine rich repeat 115 174 IPR001611 GO:0005515
Vivi5g05217 1018 FunFam Leucine-rich repeat receptor-like protein kinase 38 204 - -
Vivi5g05217 1018 Pfam Protein kinase domain 716 931 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05217 1018 ProSitePatterns Serine/Threonine protein kinases active-site signature. 844 856 IPR008271 GO:0004672|GO:0006468
Vivi5g05217 1018 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 356 1007 - -
Vivi5g05217 1018 SMART serkin_6 715 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05217 1018 SUPERFAMILY L domain-like 388 639 - -
Vivi5g05217 1018 ProSiteProfiles Protein kinase domain profile. 715 1014 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05217 1018 ProSitePatterns Protein kinases ATP-binding region signature. 721 743 IPR017441 GO:0005524
Vivi5g05217 1018 Gene3D Ribonuclease Inhibitor 350 647 IPR032675 -
Vivi5g05217 1018 MobiDBLite consensus disorder prediction 55 75 - -
Vivi5g05217 1018 SMART LRR_sd22_2 233 259 - -
Vivi5g05217 1018 SMART LRR_sd22_2 161 184 - -
Vivi5g05217 1018 SMART LRR_sd22_2 113 139 - -
Vivi5g05217 1018 SMART LRR_sd22_2 185 217 - -
Vivi5g05217 1018 SMART LRR_sd22_2 577 603 - -
Vivi5g05217 1018 SMART LRR_sd22_2 433 454 - -
Vivi5g05217 1018 SUPERFAMILY L domain-like 61 344 - -
Vivi5g05217 1018 SMART LRR_typ_2 577 600 IPR003591 -
Vivi5g05217 1018 SMART LRR_typ_2 409 433 IPR003591 -
Vivi5g05217 1018 SMART LRR_typ_2 481 505 IPR003591 -
Vivi5g05217 1018 SMART LRR_typ_2 113 136 IPR003591 -
Vivi5g05217 1018 SMART LRR_typ_2 137 160 IPR003591 -
Vivi5g05217 1018 SMART LRR_typ_2 601 626 IPR003591 -
Vivi5g05217 1018 SMART LRR_typ_2 233 257 IPR003591 -
Vivi5g05217 1018 SMART LRR_typ_2 161 185 IPR003591 -
Vivi5g05217 1018 ProSiteProfiles Leucine-rich repeat profile. 163 185 IPR001611 GO:0005515
Vivi5g05217 1018 Pfam Leucine rich repeat N-terminal domain 40 86 IPR013210 -
Vivi5g05217 1018 Gene3D Phosphorylase Kinase; domain 1 696 795 - -
Vivi5g05217 1018 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 796 1017 - -
Vivi5g05217 1018 FunFam LRR receptor-like serine/threonine-protein kinase EFR 686 795 - -
Vivi5g05217 1018 SUPERFAMILY Protein kinase-like (PK-like) 698 1006 IPR011009 -
Vivi5g05217 1018 Gene3D Ribonuclease Inhibitor 106 349 IPR032675 -
Vivi5g05217 1018 Gene3D Ribonuclease Inhibitor 36 105 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05217 Vivi-Chr5 153617893 153621255 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05217 40 1007 Receptor kinase-like Gene Family AT3G47570 40.385 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi5g05217 Pkinase 1.5e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05217 - - vvo:131603287 1578.53