Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05215 ATGCAAACCAAAACCAAACCAAAAACCAAAGAAACAAACATGGCTTTGTTTCCTCATTCACTTTTTCATATTTTTGCCTTATTAATGATCCTTATTGTGCCCTTTGATTTCAACAACCTTTTGGTTGGTGTATCATCAACCACTCTTAGTATCACCACAGACAAAGAAGCCTTAATCTCATTAAAGTCTCAATTGAGTACTACCAATGACACTTCTAGTTCTAGTTCTCACCCATTATCCTCTTGGAGTCATGATTCATCTCCTTGCAATTGGACTGGTGTCCTATGCGACAAGCATAACCAAAGAGTCACTGCCTTAGATCTTTCAGGTTTCGGCCTCTCGGGTTACCTTAGCCCTTATATCGGTAACATCTCCTCTCTTCAGTCCCTACAATTGCAGGATAACCAGCTCACAGGATTCATTCCAAACCAAATCACCAATCTAAATAACTTGAGAGTTCTAAACATGAGCTCTAACAGATTCGAAGGAATGCTTCTTTCGAATCTTACATACCTAAACGAGCTCAAGATTCTTGATTTGTCTTCAAATAAGATAGTAAGTAAAATTCCTGAAGACATCAGCAGCTTGAAAAAGCTGCAGGTCTTGAAACTCGGAGGGAATAGATTCTATGGTACAATTCCAGCAGCTCTAGGAAATATTTCATCTCTGAGAAATATAAGTTTTGGCACCAACTCTCTTAGTGGCAGGATTCCGAGCGACTTAGGTAGGCTACATAGTTTAATTGAGCTTGATCTCACTATTAACAATCTTACCGGAACTGTTCCATCTGTCGTATACAATATGTCTTCCCTTGTTACCTTAGCCGTAGCTTCGAATTCCTTATGGGGTGATATTCCTTATGATGTTGGTGTTAAACTTCCAAAACTACTAGTTTTCAATTTTTGCTTCAATAAGTTCACTGGTAGAATTCCAGGGTCTTTGCATAACCTCACCAATATTAGGATCATTCGCATGGCCTCTAACCATTTGGAAGGAACAGTTCCACCTGGTTTAGGAAACCTTCCATCTCTTCACATGTATAACATTGGCTATAACAGGATAGTCAACTCAGTCGATGGTTTGGACTTCATCACTTCATTGACAAACAGCACTCACTTGAACTTTCTAGCAATTGATGGAAATATGCTAGAAGGTGTGATTCCTGATACCATCGGCAATCTTTCCAAGGAACTCTCAAAATTATACATGGGACAGAACCGTTTCAATGGAAGTATACCATCTTCCATCAGTCGTCTTAGTGGTTTGAGTTTGTTAAACTTGAGCTACAATTCGATTAGTGGAGAGATTCCAAAGGAGTTAGTCCAGTTAGAGGAACTACAAGTGCTAGATCTGGCTGGAAATAATCTATCAGGGTCTATTCCAAGTTCTCTTGGTAATCTTATAAAGTTAAACAAGATTGATTTGTCAAGAAATAAACTTGTGAGTAGAATACCAAACAATTTTGGGAATTATCAAAGCCTGCTCTACATGGACTTATCTAGCAACAAACTCAATGGAAGCATACCTGTGGAAATCCTCAATCTCCCAACTTTGAGCAATGTTTTGAACTTATCAAATAATTTGTTGAGTGGACCAATACCTCAAGTTGGGAAATTGACTACCATTGCCACCATTGACTTTTCCAACAACCAATTGAATGGAAACATCCCCAGCTCATTCAGCAGTTGTTCGAGCCTGGAGAAATTGATTTTGGCCAGGAATATGCTCTTAGGTTCCATTCCAAAATCTCTTGGAGATGTGAGAGGATTGGAAACTTTGGACCTGTCCTCGAACCTACTCTCTGGATCCATTCCTGATGAACTTAAAAACCTGCATGTCCTTAAGCTTTTAAACCTGTCTTACAATGACTTAGAAGGAGTCATTCCCAATGGTGGAGTTTTCCAAAATCTCTCTAATGTCCACTTAGAAGGAAATACGAAACTATGCTTGAGCTTTGCATGCGTGCCTCGACTCCATAGAAGAACACATGTCAGATTTTATATCATCATAGCTATTGTGTTAATATCGGTTCTATGTCTCGCAACTGGCTTGCTACTATACATGAAGTATACAAAGGTTAAGGTAACAGCAACATCTGAACAGCTAAAGCCACAGACTCCAATGGTCTCTTACGACGAGCTTCGTTTGGCAACTGAGGGGTTCAGCCAAGAAAATTTAATAGGAACAGGGAGTTTTGGATCGGTGTATAAAGGCTATCTAAGTCAAGAAAACAGTACTGTTGCAGTGAAAGTGCTTGACACACTAAGAACAGGTTCTTTAAAGAGTTTCTTTGCAGAGTGTGACGCTATGAAGAACTCAAAGCACAGAAATCTTGTTAAGCTAATCACATCATGCTCTAGTGTTGATTTTAGAAACAACGATTTTCTGGCTTTGATCTACGAGTATTTAAGTAACGGGAGCTTGGAAGATTGGATTAAGGAGAGGAGAAAGCATGAAAACGGAAATGGTTTGAACCTTTTGGAGAGACTAAATATAGCTATAGATGTTGCTTCTGCATTAGATTACCTGCACAATGACAGTGAAACTCCAATTGTGCACTGTGATATTAAGCCGAGTAACATTCTCCTGAATGAAGATTTGACTGCAAAGGTTGGAGACTTTGGTTTGGCTAGGCTACTGATTCAAAGATCAAACAATCAATTTTCCATAAGTTCCACTAATGTCCTTAGAGGTTCAATCGGTTACATACCTCCAGAATATGGATGGGGAGAGAAAGCTTCTGCGGCAGGAGATGTATATAGTTTTGGGATAGTGATACTAGAGCTCTTCTCTGGGAAAAGTCCACAAGATGATTGCTTCAGTGGAGGCCTGAGCATAGCAAAATGGGTGCAATCAGGATTCAAAAACAAGACTGTTCAAGTCATTGACCCTCAGCTGCTAACTCTCATTTACGATGACGACTCAGCTAGAGACACTAATCTACAAATTCAGTGTGTGGATGCAATTATGGGAGTTGGCATGTCCTGCACTGCAGACAATCCAGATGATCGCATTGTCATTAGAGCTGCTGTTCGCCAACTAAATGCTGCTAGGGACTGTCTTCTGAAAAAATCTGATATTAAGAGTCCTACTGAAAGCTATTTGACGAATAATGCAAAAGTTGAAATTTGA 3132 0.3953 MQTKTKPKTKETNMALFPHSLFHIFALLMILIVPFDFNNLLVGVSSTTLSITTDKEALISLKSQLSTTNDTSSSSSHPLSSWSHDSSPCNWTGVLCDKHNQRVTALDLSGFGLSGYLSPYIGNISSLQSLQLQDNQLTGFIPNQITNLNNLRVLNMSSNRFEGMLLSNLTYLNELKILDLSSNKIVSKIPEDISSLKKLQVLKLGGNRFYGTIPAALGNISSLRNISFGTNSLSGRIPSDLGRLHSLIELDLTINNLTGTVPSVVYNMSSLVTLAVASNSLWGDIPYDVGVKLPKLLVFNFCFNKFTGRIPGSLHNLTNIRIIRMASNHLEGTVPPGLGNLPSLHMYNIGYNRIVNSVDGLDFITSLTNSTHLNFLAIDGNMLEGVIPDTIGNLSKELSKLYMGQNRFNGSIPSSISRLSGLSLLNLSYNSISGEIPKELVQLEELQVLDLAGNNLSGSIPSSLGNLIKLNKIDLSRNKLVSRIPNNFGNYQSLLYMDLSSNKLNGSIPVEILNLPTLSNVLNLSNNLLSGPIPQVGKLTTIATIDFSNNQLNGNIPSSFSSCSSLEKLILARNMLLGSIPKSLGDVRGLETLDLSSNLLSGSIPDELKNLHVLKLLNLSYNDLEGVIPNGGVFQNLSNVHLEGNTKLCLSFACVPRLHRRTHVRFYIIIAIVLISVLCLATGLLLYMKYTKVKVTATSEQLKPQTPMVSYDELRLATEGFSQENLIGTGSFGSVYKGYLSQENSTVAVKVLDTLRTGSLKSFFAECDAMKNSKHRNLVKLITSCSSVDFRNNDFLALIYEYLSNGSLEDWIKERRKHENGNGLNLLERLNIAIDVASALDYLHNDSETPIVHCDIKPSNILLNEDLTAKVGDFGLARLLIQRSNNQFSISSTNVLRGSIGYIPPEYGWGEKASAAGDVYSFGIVILELFSGKSPQDDCFSGGLSIAKWVQSGFKNKTVQVIDPQLLTLIYDDDSARDTNLQIQCVDAIMGVGMSCTADNPDDRIVIRAAVRQLNAARDCLLKKSDIKSPTESYLTNNAKVEI 1043
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05215 1043 ProSitePatterns Serine/Threonine protein kinases active-site signature. 851 863 IPR008271 GO:0004672|GO:0006468
Vivi5g05215 1043 FunFam Leucine-rich repeat receptor-like protein kinase 51 215 - -
Vivi5g05215 1043 FunFam Inactive leucine-rich repeat receptor-like protein kinase 365 657 - -
Vivi5g05215 1043 ProSiteProfiles Leucine-rich repeat profile. 589 611 IPR001611 GO:0005515
Vivi5g05215 1043 SMART LRR_sd22_2 196 228 - -
Vivi5g05215 1043 SMART LRR_sd22_2 587 613 - -
Vivi5g05215 1043 SMART LRR_sd22_2 395 421 - -
Vivi5g05215 1043 SMART LRR_sd22_2 539 568 - -
Vivi5g05215 1043 SMART LRR_sd22_2 124 150 - -
Vivi5g05215 1043 SMART LRR_sd22_2 172 195 - -
Vivi5g05215 1043 SMART LRR_sd22_2 443 469 - -
Vivi5g05215 1043 ProSiteProfiles Leucine-rich repeat profile. 174 196 IPR001611 GO:0005515
Vivi5g05215 1043 Gene3D Phosphorylase Kinase; domain 1 707 802 - -
Vivi5g05215 1043 SUPERFAMILY L domain-like 65 359 - -
Vivi5g05215 1043 Pfam Leucine rich repeat 566 624 IPR001611 GO:0005515
Vivi5g05215 1043 Pfam Leucine rich repeat 397 456 IPR001611 GO:0005515
Vivi5g05215 1043 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 267 1013 - -
Vivi5g05215 1043 ProSiteProfiles Protein kinase domain profile. 721 1022 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05215 1043 Pfam Leucine rich repeat N-terminal domain 53 97 IPR013210 -
Vivi5g05215 1043 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 254 362 - -
Vivi5g05215 1043 Gene3D Transferase(Phosphotransferase) domain 1 803 1034 - -
Vivi5g05215 1043 Gene3D Ribonuclease Inhibitor 49 116 IPR032675 -
Vivi5g05215 1043 Gene3D Ribonuclease Inhibitor 117 357 IPR032675 -
Vivi5g05215 1043 Pfam Protein kinase domain 722 937 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05215 1043 ProSitePatterns Protein kinases ATP-binding region signature. 727 750 IPR017441 GO:0005524
Vivi5g05215 1043 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 803 1026 - -
Vivi5g05215 1043 SMART LRR_typ_2 587 610 IPR003591 -
Vivi5g05215 1043 SMART LRR_typ_2 443 466 IPR003591 -
Vivi5g05215 1043 SMART LRR_typ_2 467 490 IPR003591 -
Vivi5g05215 1043 SMART LRR_typ_2 124 147 IPR003591 -
Vivi5g05215 1043 SMART LRR_typ_2 172 196 IPR003591 -
Vivi5g05215 1043 SMART LRR_typ_2 317 341 IPR003591 -
Vivi5g05215 1043 SMART LRR_typ_2 244 268 IPR003591 -
Vivi5g05215 1043 SMART LRR_typ_2 611 636 IPR003591 -
Vivi5g05215 1043 SUPERFAMILY Protein kinase-like (PK-like) 703 1013 IPR011009 -
Vivi5g05215 1043 Gene3D Ribonuclease Inhibitor 358 655 IPR032675 -
Vivi5g05215 1043 SUPERFAMILY L domain-like 369 649 - -
Vivi5g05215 1043 SMART serkin_6 721 1021 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05215 1043 FunFam LRR receptor-like serine/threonine-protein kinase EFR 692 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05215 Vivi-Chr5 153503043 153506601 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05215 53 1025 Receptor kinase-like Gene Family AT3G47570 40.421 0.0 681
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vivi5g05215 Pkinase 9.1e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05215 - - vvo:131603287 1922.52