Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05212 ATGAAACAGTTCAATTTGGATGCAGTGTTTCACGCCAAAGAGGATAATCCTTTTCCGCGCGAACCAAAAATGGAAAATACACTTGAATCTTCGAGCAGTTCGCAATATAAAAAGATAACATCGAGATGGGATCCAGTTGAAGCGTGTCGGCCTATAATCGGCGAAGCGCCTGTGTTTTATCCAACTTTTGAGGAGTTTAAAGACACACTCGGTTACATAGCTAAGATACGTCCCGTAGCAGAACCGTATGGCATATGTAGAATAGTCCCTCCAGCTTGTTGGACTCCACCGTGTCCGCTTAACGAGAGAGAGATATGGGAAAATGCTAAGTTTCCAACTCGTATTCAGCAAGTTGATTTGCTTCAGAACCGGGAGCCGATGAGGAAGAAAAGTAGGGGAAAGAAACGAAAACGTAGAAGGCAGTCGAAGATGGGAACATGTAATAGGAGAACTGGAAATTCATGTTCTGAAGCTAATGTGACTTCTGAATCGGACGATACGTTTGGATTCCAATCAGGGCCAGATTTCACCCTTAAGGAATTTCAGCAATATGGAAATTCTTTTAAAGATTGCTACTTCGGGTTGATCGATGCCAAAGATGGTAGAGGCGGTGATAGTAATCACCACGAGAGACGTGATCCGTCAGTGGAGGAAATTGAAGGTGAATACTGGCGAATAATCGAGCAACCGACGGATGAGGTCGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGCGGTTTTCCTAAGACATCGTCGTTTACTAAAAGTGATTCAGATTCGTATGCTATGTCTGGATGGAATCTGAATAACTTTGCACGACTGCCAGGTTCTGCATTGTGTTTTGAAGGAAGTGACATCTCAGGAGTTTTAGTGCCATGGTTGTATGTCGGAATGTGCTTTTCCACATTTTGTTGGCATGTTGAAGATCATCATCTCTATTCGCTTAATTATCTGCACTGGGGCGATCCAAAAGTATGGTATGGTGTACCTGGGAGCCATGCATCGGCCATGGAAGACACAATGAGGAAACACTTGCCTGATTTGTTTGAAGAGAATCCGAATCTACTCAACGAGTTGGTGACTCAATTCTCTCCTTCGATACTTAAGTCCGAGGGGATTCCTGTGTATCGAGCTGTCCAACATTCCGGAGAATTTGTTATCACGTTTCCAAGGGCTTACCACGGAGGTTTCAGCTGTGGCTTCAACTGTGCGGAGGCTGTGAATGCGGCTCCTTATGATTGGTTTATGCATGGTCAGAATGCTGTCGAGATTTACAGTATGCAGTGCCGTAAGACATCATTGTCCCATGATAAATTGTTGTTTGGATCTGCTAAGGAAGCTGTACATGCCCTTTCGAAGACAACTCTTGACGGAAAAGAAAATCTTCAATATTTAAAATGGAGAAATGCTTGTGGGAAAGACGGAGTTCTTACCAATGCAGTTAAGACAAGGATAATGATGGAAAAAGAGAGGCGGGACTGGCTTCCGTCACATTTAAAGATGCTGAAGATGGATAATGACTTTGATTCGGTTGAGGAAAGGGAATGCTTCTCTTGCTTCTACGACTTGCACCTATCCGCCGTCGGTTGCAAGTGCTCTCCCGACAGCTTCTCGTGTCTTAAACACTTCAAGTTGTTTTGCTCATGTGAAATGGATAACAGATTCGTGCTGGTTCGTTATACTATGAATGAGCTTAGTACGTTGGTTGAAGCTTTAGAAGGAGAGCCACGCGCAATAGAAGCGTGGACAACTGGAAAAATTGGAACGATTTCCTCTAGTGTTGAGAATGGTTGCCTGCAAGATCAAGATGTGGAGAGAGTCATACGCAGAACCAATAATTACGAAGACAGGAAACGCTCACTTTCTTGTGCAGGAATTAATGAGAAGTCGAATTCGAATGTTCCTAGCAGTCCTTACCGTCATATTTTGTCCGAGTTGGTCCACTTAAAGTCTCACCATGTAGCGTTTAGTGCACCTTATGCGGATACGAATGGCGTTAAGGACAACATGAATGATACTAAGTCGATCATGGACAATAAGTGTGTTCCATATGCGGAAAAAGAGGTTGCAAAGGAGCGAGACAACATGGAACTTGGTCCTGGCGGTATTTATGACTTGGAAAAAGAACCTTCATCGTGTCGAACCGATGGTTGTAAGCTGTTTGGGGTTGATCTGCAAAAACGTTCAGAATCAGGACGGAAACTCAATAGTACGTTCGAAGCAGGGGTTCTAGACACCTCCAATTCAAGTATATCTTTGACAAACCAAATCTCCCCAATGCAAAAGTTTAGTATTTCTGTGGAGCTTATAAATTTGGGATCTGTTCTCCATGGAAAGCATTGGTGCAGTAAGCACGCAATATATCCAAAAGGATTCAAGAGCCGTGTTAAGTTCCTTAGCATTCTTGATCCAGCAAGCATCTGTACCTATGTTTCGGAAGTCATTGATTCTGGACTTCTCGGGCCTTTTTTCAGGGTTACCTTGGAAGAACATCCGAACGAGGTTTTCACAAACACCTCAGCCGATAAGTGCTGGGAAACAGTTATTGACAGACTAAACTATGAAATGAATAAGCGCAGGATTCTTGGTGAACAAGAAATGCCTCCCTTGGAACTACTTCACAACATCAATGGTCATAAAATGTTTGGATTCCATTCACCGTTCATTATTCAGTCCATTGAAGCTCAAGATCCGAGTCATAAATGTGTAGATTACTGGAATCACAAACAAGTTAGTTTGGGATCTTCTGGCAAAGCCACTGATGATTCTAAGTTAACTTGCGGCTCAAGTAACAACTCTTTAGATGACTTAAAGACCAAACTTTTTGGCGTTGATTTGATAAAGCAGGAGGAGGATGACATAGGAGAAAGTTCAGATTCATTTGAAGACATGAAACCGATTTTAGAAGGATTCTTAAAGAAGGCGAAACCTGATGAGTTAAGGGCAATGCGCAAGTTATTCAGCTCTGATGCACAAATGACCCAGTGGAGACCGACATTGATGACAATGATAGAGGAAATCGAGAAAGAATCTCGGTAA 3051 0.429 MKQFNLDAVFHAKEDNPFPREPKMENTLESSSSSQYKKITSRWDPVEACRPIIGEAPVFYPTFEEFKDTLGYIAKIRPVAEPYGICRIVPPACWTPPCPLNEREIWENAKFPTRIQQVDLLQNREPMRKKSRGKKRKRRRQSKMGTCNRRTGNSCSEANVTSESDDTFGFQSGPDFTLKEFQQYGNSFKDCYFGLIDAKDGRGGDSNHHERRDPSVEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKTSSFTKSDSDSYAMSGWNLNNFARLPGSALCFEGSDISGVLVPWLYVGMCFSTFCWHVEDHHLYSLNYLHWGDPKVWYGVPGSHASAMEDTMRKHLPDLFEENPNLLNELVTQFSPSILKSEGIPVYRAVQHSGEFVITFPRAYHGGFSCGFNCAEAVNAAPYDWFMHGQNAVEIYSMQCRKTSLSHDKLLFGSAKEAVHALSKTTLDGKENLQYLKWRNACGKDGVLTNAVKTRIMMEKERRDWLPSHLKMLKMDNDFDSVEERECFSCFYDLHLSAVGCKCSPDSFSCLKHFKLFCSCEMDNRFVLVRYTMNELSTLVEALEGEPRAIEAWTTGKIGTISSSVENGCLQDQDVERVIRRTNNYEDRKRSLSCAGINEKSNSNVPSSPYRHILSELVHLKSHHVAFSAPYADTNGVKDNMNDTKSIMDNKCVPYAEKEVAKERDNMELGPGGIYDLEKEPSSCRTDGCKLFGVDLQKRSESGRKLNSTFEAGVLDTSNSSISLTNQISPMQKFSISVELINLGSVLHGKHWCSKHAIYPKGFKSRVKFLSILDPASICTYVSEVIDSGLLGPFFRVTLEEHPNEVFTNTSADKCWETVIDRLNYEMNKRRILGEQEMPPLELLHNINGHKMFGFHSPFIIQSIEAQDPSHKCVDYWNHKQVSLGSSGKATDDSKLTCGSSNNSLDDLKTKLFGVDLIKQEEDDIGESSDSFEDMKPILEGFLKKAKPDELRAMRKLFSSDAQMTQWRPTLMTMIEEIEKESR 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05212 1016 SUPERFAMILY Clavaminate synthase-like 176 449 - -
Vivi5g05212 1016 Pfam F/Y rich C-terminus 825 912 IPR003889 GO:0005634
Vivi5g05212 1016 Gene3D Cupin 41 414 - -
Vivi5g05212 1016 SMART JmjN_1 55 96 IPR003349 -
Vivi5g05212 1016 Pfam JmjC domain, hydroxylase 297 412 IPR003347 -
Vivi5g05212 1016 FunFam Putative lysine-specific demethylase JMJ16 769 907 - -
Vivi5g05212 1016 MobiDBLite consensus disorder prediction 122 166 - -
Vivi5g05212 1016 Pfam C5HC2 zinc finger 520 572 IPR004198 -
Vivi5g05212 1016 Pfam jmjN domain 57 90 IPR003349 -
Vivi5g05212 1016 ProSiteProfiles FYR domain FYRC motif profile. 823 913 IPR003889 GO:0005634
Vivi5g05212 1016 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Vivi5g05212 1016 SMART fyrn_3 777 821 IPR003888 GO:0005634
Vivi5g05212 1016 Pfam F/Y-rich N-terminus 770 818 IPR003888 GO:0005634
Vivi5g05212 1016 MobiDBLite consensus disorder prediction 146 166 - -
Vivi5g05212 1016 Gene3D - 768 907 - -
Vivi5g05212 1016 ProSiteProfiles JmjC domain profile. 267 430 IPR003347 -
Vivi5g05212 1016 ProSiteProfiles FYR domain FYRN motif profile. 763 821 IPR003888 GO:0005634
Vivi5g05212 1016 MobiDBLite consensus disorder prediction 128 145 - -
Vivi5g05212 1016 SMART fyrc_3 827 919 IPR003889 GO:0005634
Vivi5g05212 1016 PANTHER LYSINE-SPECIFIC DEMETHYLASE 52 802 - -
Vivi5g05212 1016 SMART cupin_9 267 430 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05212 Vivi-Chr5 153477433 153482481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05212 64 1012 JUMONJI Transcription Factor Family AT4G20400 46.653 0.0 838
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi5g05212 JmjC 9.3e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05212 K11446 - gmx:100784581 1431.39