Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05210 ATGCAGAGCCAAATTGTGTGTAATGGTTGTAGGAACATGCTGCTGTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTTCCCCTGTCCCTCCACCTGGGATGGATATGTCTCAGCTTTATTGCGGAGGCTGTAGGACATTGCTAATGTACACACGGGGAGCTACGAGTGTGAGATGTTCTTGTTGTCACACTGTAAACCTTGCTCCAGTATCTAATCAAGTCGCCCATGTTCCCTGCGCTAACTGCCGGACAACACTCATGTATCCTTATGGATCGCCTTCAGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATAATATGTCCAACGGAAGGGTTCAAGTTCCTGCTAATAGACCTCAGGGGACAACCAACTTCGGAACATTACCTTCTACTTCAACATCAATGCCCCAATCTCAGAGCCAAACTGTGGTGGTAGAAAATCCAATGTCTGTTGATTCGAGTGGAAAATTGGTGAGCAATGTTGTTGTCGGCGTTACAACAGACAAGAAATAA 534 0.4476 MQSQIVCNGCRNMLLYPRGATNVCCALCNTISPVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCANCRTTLMYPYGSPSVKCAVCHYITNINNMSNGRVQVPANRPQGTTNFGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05210 177 PANTHER PROTEIN LSD1 2 176 IPR040319 -
Vivi5g05210 177 NCBIfam zinc finger domain, LSD1 subclass 4 32 IPR005735 -
Vivi5g05210 177 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Vivi5g05210 177 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Vivi5g05210 177 Pfam LSD1 zinc finger 7 31 IPR005735 -
Vivi5g05210 177 Pfam LSD1 zinc finger 46 70 IPR005735 -
Vivi5g05210 177 Pfam LSD1 zinc finger 84 108 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05210 Vivi-Chr5 153420038 153425013 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vivi5g05210 zf-LSD1 9.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05210 - - gmx:100776394 315.464