Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05209 ATGCTGCTGTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATTTCCCCTGTCCCTCCACCTGGGATGGATATGTCTCAGCTTTATTGCGGAGGCTGTAGGACATTGCTAATGTACACACGGGGAGCTACGAGTGTGAGATGTTCTTGTTGTCACACTGTAAACCTTGCTCCAGTATCTAATCAAGTCGCCCATGTTCCCTGCGCTAACTGCCGGACAACACTCATGTATCCTTATGGATCGCCTTCAGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATAATATGTCCAACGGAAGGGTTCAAGTTCCTGCTAATAGACCTCAGGGGACAACCAACTTCGGAACATTACCTTCTACTTCAACATCAATGCCCCAATCTCAGAGCCAAACTGTGGTGGTAGAAAATCCAATGTCTGTTGATTCGAGTGGAAAATTGGTGAGCAATGTTGTTGTCGGCGTTACAACAGACAAGAAATAA 498 0.4498 MLLYPRGATNVCCALCNTISPVPPPGMDMSQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPVSNQVAHVPCANCRTTLMYPYGSPSVKCAVCHYITNINNMSNGRVQVPANRPQGTTNFGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05209 165 PANTHER PROTEIN LSD1 2 164 IPR040319 -
Vivi5g05209 165 NCBIfam zinc finger domain, LSD1 subclass 31 60 IPR005735 -
Vivi5g05209 165 NCBIfam zinc finger domain, LSD1 subclass 1 20 IPR005735 -
Vivi5g05209 165 NCBIfam zinc finger domain, LSD1 subclass 69 98 IPR005735 -
Vivi5g05209 165 Pfam LSD1 zinc finger 34 58 IPR005735 -
Vivi5g05209 165 Pfam LSD1 zinc finger 1 19 IPR005735 -
Vivi5g05209 165 Pfam LSD1 zinc finger 72 96 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05209 Vivi-Chr5 153420038 153425013 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vivi5g05209 zf-LSD1 4.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05209 - - gmx:100776394 291.582