Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05177 ATGTCAGAAAGTAACGACCTCGCCGCCGCAACCGCCGCCGGAGGTGGTTTCCGGAGTCCAACATTCTCACGGCCGGTTTCATGGACTGACCGCTCACCGACAACCAGAAAACCGGTTCCTACGGCGAATAACAGACATCGATCGTTGCTTCCGCCGCTTCGTCCTCTTTCAATCAACAAACGCAGCATTGGGGAATGGCCGAGCGCTGGATCTGACGATCTCGGAGTTTGGCCGCTAGCTGAAACTCCGAGAGGGAGAGGTTCAGTCACCGGTTCAGTCGCTGGTTCAGAGTTTCAGTTCAAGAGAGACAAGTTAGCTTTCTATGACAAAGAATGTTCTAGAATCGCTGAACATGTTTATCTCGGAAGCGACACTGTTGCGAAGAACCATGAGCTTTTAAGGAAGAATGGGATTACGCACGTGCTTAATTGTGTTGGGTTTGTTTGTCCTGAGTATTTCAGAAGTGATTTTGTTTACAAAACTCTTTGGTTGCGGGATAGTCCGACGGAAGACATCATGAGTATTCTGTACGATGTCTTTGATTACTTTGAGGATGTTAGAGTACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGTGTTTCTAGATCAACCTCTTTGGTCATTGCTTATGTTATGTGGAGAGAAGGACAAAGCTTTGAGGATGCTTTTCATTATGTTAAGAATGCTCGTGGTGTTACAAATCCTAACATGGGTTTTGCTTCTCAGCTTCTGCAGTGTCAAAAAAGAGTGGTGAATGTGAATGCGAATGCTAATGCGAGTGCTATGCCTTCTAGTCCTAGTTCTGTCCTTAGGATGTATAGAATGGCGCCTCATTCGCCTTATGATCCTCTTCATTTGGTACCGAAAATGGTTGACAAGCCTTGTGCGAAATCTCTTGATTCTCGGGGTGCTTTTATTGTTCAAGTTCCTTCTGCTATATATATTTGGATTGGTAAGAATTGCAGTTCTTATATGGCTTGTAATGCACGAATGGCAGCTTTGCAGGTTGTTCGTTACGAGAAAGCAAATGCTCCGATTCGTGGCATTTGCGAAGATGAAGAGCCGATGGAGTTTTGGGCTGCTTTTTCTAAATACCAACTATTGTTGGTGAGTTCTGGTAATAACAGAGATATGGTGATGAAGGATTCTGATGAAAGAATGGAGATTGATGATGATGTTGATATGGGGGTTCATCCTAGGAAAGTTGATGAGTATGATTTGGATTTCGGGATTTTTAACGAAGCACTTGCTGGTGGAGTTGTTCCGCCTTTTTCTGTGTCTAATACCGGATCAGAAACATTGCTACCTGCTAGAGAAAATAGCTGGGGAAGACTAAGGAGGAAGCTTGCTAATGGTATCATGAAAGGGTTGTTTACATCCTCCAAATGCTGTGATATATCCTCGCCGAAAGACGAAGTAAAGGTGAACGGTGGTTCATCCTTGCCACTAACTCCTACTCGAAAACCAGATTCTTTTCCTTGTTATTTAAGTAACAGCCCGATGTTCAGTTCCAAGTCGCCCACACTTTCGCCTTCCAACTCTGATTATGCTAGCTCCTTCACACTTTCACCCGCGTCTACACATTGGTCTGATTTGTCATTCATGTCCTCTCGGCAGCCATCGCCTTCTTCTGGACTTGAATCAACCGAACAACCCTTTTATGTCAATAAAGACGCCACTTTCTTAGAAAGATCCTCTTCGCTTCGCAAAGATGCCACTGTCTCTCCATCTTCAGAGACACTTTTGGCTAACCACACCATGCTAAGGTCAAAGTCCTACAAAGGGTCTAACTCTAACCGCTCCATTGCAGAGCGCAGAGGGAGTAAACCGCCACCTCAAATGTTGGTACCTTCTTTCCGGGAATCATCGCGTGCAGTCTGA 1884 0.4496 MSESNDLAAATAAGGGFRSPTFSRPVSWTDRSPTTRKPVPTANNRHRSLLPPLRPLSINKRSIGEWPSAGSDDLGVWPLAETPRGRGSVTGSVAGSEFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRKNGITHVLNCVGFVCPEYFRSDFVYKTLWLRDSPTEDIMSILYDVFDYFEDVRVQGGRVLVHCCQGVSRSTSLVIAYVMWREGQSFEDAFHYVKNARGVTNPNMGFASQLLQCQKRVVNVNANANASAMPSSPSSVLRMYRMAPHSPYDPLHLVPKMVDKPCAKSLDSRGAFIVQVPSAIYIWIGKNCSSYMACNARMAALQVVRYEKANAPIRGICEDEEPMEFWAAFSKYQLLLVSSGNNRDMVMKDSDERMEIDDDVDMGVHPRKVDEYDLDFGIFNEALAGGVVPPFSVSNTGSETLLPARENSWGRLRRKLANGIMKGLFTSSKCCDISSPKDEVKVNGGSSLPLTPTRKPDSFPCYLSNSPMFSSKSPTLSPSNSDYASSFTLSPASTHWSDLSFMSSRQPSPSSGLESTEQPFYVNKDATFLERSSSLRKDATVSPSSETLLANHTMLRSKSYKGSNSNRSIAERRGSKPPPQMLVPSFRESSRAV 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05177 627 Gene3D Severin 272 368 IPR029006 -
Vivi5g05177 627 PANTHER MKPA PROTEIN 27 622 - -
Vivi5g05177 627 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 103 253 IPR029021 -
Vivi5g05177 627 ProSitePatterns Tyrosine specific protein phosphatases active site. 195 205 IPR016130 GO:0016311|GO:0016791
Vivi5g05177 627 Pfam Dual specificity phosphatase, catalytic domain 119 249 IPR000340 GO:0008138|GO:0016311
Vivi5g05177 627 CDD DSP 112 246 - -
Vivi5g05177 627 SMART VILL_6 275 366 IPR007122 GO:0051015
Vivi5g05177 627 SMART dsp_5 111 250 IPR020422 GO:0006470|GO:0008138
Vivi5g05177 627 MobiDBLite consensus disorder prediction 1 51 - -
Vivi5g05177 627 SUPERFAMILY Actin depolymerizing proteins 266 366 - -
Vivi5g05177 627 Gene3D Protein tyrosine phosphatase superfamily 92 252 IPR029021 -
Vivi5g05177 627 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 231 IPR000387 GO:0016311|GO:0016791
Vivi5g05177 627 ProSiteProfiles Dual specificity protein phosphatase domain profile. 111 253 IPR020422 GO:0006470|GO:0008138
Vivi5g05177 627 MobiDBLite consensus disorder prediction 569 605 - -
Vivi5g05177 627 MobiDBLite consensus disorder prediction 569 627 - -
Vivi5g05177 627 MobiDBLite consensus disorder prediction 22 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05177 Vivi-Chr5 152914436 152916751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05177 3 147 Protein tyrosine phosphatase (PTP) family AT3G55270 40.881 4.99e-29 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05177 - - tpra:123917031 898.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05177 5 152914436 152916751 Vivi5g05177 5 152914436 152916751 ECH
Vivi5g05177 5 152914436 152916751 Vivi3g03252 3 55151221 55154434 PCT