Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05160 ATGGGAAGAACCAAAGTTTCCACCCTTTTCTCTTCCAATAACAACCACCACTACCCTCTTCCTCTTTCCAACACCATTAACCAAACTCTTGTAAACAAACCCAATTCACACAAAGATTCTTTTCCCTTATCACTTTTCAAATTTTTTCAACGCCTTATCTATGGAAGGAAAGTTGATGGAGGATCAAGAACAGAGGAAGAAGAGAAAGTATACTCTTGGTTATACACCTTGGCTCAGTCTGAGAAAAACATGGTCTTTGAGTATGTTAGGTCAACTGAAAGAGGCTTAAGTTTTACTGAAGCTGAGAGGAGGCTGCAGGAAAACGGACCAAATGTTCCACTAGAGTATTCTTTTCCAAGCTCGTGGCATCTTCTATGGAATGCTCTTTTCCATCCTTTCAATATGATTCTGATTGTTTTATCTTCATTGTCATTCATTGCCCGAGACTATCCAAACGGGTTCATCATGCTCATATTGCTTTTCATCAGTGTCATCCTCCGCTTCTGTCTGGAACACAAAAGCTCAAAAGCAGCGATGAAGCTATCAGAATTTTTAAAATGTCCTATAAGAGTTCAAAGATGTGCTGGTAGAATTGAGCAGAAAGAATTGACAGTTCAAGTTGATCACAGGGATGTAGTTCCAGGTGACATTGTGATTTTTGAACCCGGTGACCTCTTTCCTGGAGATGTCAGGCTGATATCTTCAAAACACCTTGTTGTAAGTCAGGCTTCACTAACTGGGGAATCTATAACAACTGATAAAACTGCTGATGTTAGAGAAGATCACATCACTCCTTTACTAGATTTAAAGAACATTTGTTTTATGGGAACAAATGTTGTATCAGGTACTGGAACAGGTTTAGTTATTTCAACTGGATCCAATACTTACATGAGCACCATGTTTTCAAAAATTGGGAAGAAGAAGCCACCGGATGACTTTGAAAAGGGTCTAAGATGGATATTTTACATGCTTATTTCTGTTATGGTAGTAGTTGTTACAATTATGTTCGTGACAGATTACACTGCATCTAAGAAATTGAGCAAGAGTATTCTCTTTGCCATCTCAGTTGCATCTGCCCTTAATCCTCAGATGCTTCCCCTCATCATTAACACATGCCTTGCGAAAGGAGCACTTGCTATGGCTAAAGACAGATGTATTGTAAAAAGTCTAACAACCATACGCGAGATGGGATCAATGGATATCCTTTGTATTGACAAGACAGGCACCCTTACAATGAATCATGCAATTTTGGTTAATCATCTCGACTGTAGGGGTTTACCCCGAGAAAAAGTTCTACGCTATGCCTTCCTCAATTCTTACTTCAAGACTGAGCAAAAGTATCCTCTAGATGATGCAATTCTAGCACATGTATATTCAAATGGATTCAAGTTTCAGCCGTCTAAGTGGAAGAAGATCAATGAGATTCCTTTTGACTTCATAAGAAGAAGAGTATCTGTCATGTTAGAAACAGACGATAGACAATTCTTTGGCAGGTTCATGGTAACAAAAGGAGCGTTGTTGGAAGTTATAAAAGTTTGTTCTTTTATTGAGAATTTTGATAAAGATGAAATCTCTACATTCTCCTCAGATGATTATCAGAGGATTTTAAATCTATCAGAAGAACTGAGCAATGAAGGGTTAAGGGTTATAGCAGTTGCTATAAAGAAGCTGGAAATGGAGCAAACTTGCGAAACAAGTAATGGAAGCAAGAGAGGCAACAGTGACTTCGAAAGAGACATGACACTCCTTGGTGTTATAACATTTTTTGACCCGCCTAAGGACTCAGCAAAGCAAGCACTTTGGTGTTTAGCCGAGAAGGGAGTGAAAGCAAAGGTTTTAACAGGTGACTCACTTTCATTAACCACAAGAATATGCAGAGAAGTTGGCATAAGTACCACTCATGTTATAACAGGACCTGAGCTTGAAGAACTTGATCACGACACTTTCCACGAAACTGTTAAAAGAGCAACGGTACTAGCTCGTCTCACGCCAACGCAGAAACTCCGAGTTGTTCAATCTTTGCAGACAATAGGAAACCATGTTGTTGGATTCCTGGGAGACGGTGTGAATGATTCACTAGCATTGGATGCTGCCCATGTAAGCATTTCTGTGGACTCGGGTGTACCCATTGCCAAAGACATGGCAGACATAATCTTACTAGAGAAAGATCTCAACGTGCTCGTCGCGGGCGTTGAGCACGGCCGTCTCACGTTCGGCAACACAATGAAATATGTAAAGATGTCAGTTATTGCTAACTTAGGAAGTATCATTTCACTTCTCATAGCAACATTGTTCCTTAAATACGAACCTTTAACTACTAGACAGCTTCTTACACAGAATTTCATCTACAGTCTCGGACAAATCGTTATTCCCTGGGACAAAATGGACGAAGAATATTTGAAAACTCCTCATAAATGGTCGGAACGAGGCTTACCAATGTTCATATTATGGAATGGACCCGTCTGCACTTTCTGTGATGTTGCAACACTTTTGTTTCTTTTGTTCTATTACAAAGCTTATGACGATGAGAAATTTTTCCATACAGCTTGGTTCATTGAGGGTCTTCTCATGCAGACTCTGATTGTTCATTTGATAAGAACTGAAAAAATCCCTTTTGTACAAGCTATTGCATCTTGGCCAGTGATTTTCTCTACTCTTGTTATATCTGCAATTGGAATTGCAATTCCATTAACTCCTATTGGGAAGGTTATGGGATTCACAGTTTTACCCCTCTCCTATTTTGGATTTTTGCTTGTTATTTTTCTAGGATATTTTACACTTGGTCAGGTTGTAAAGAGACTCTATATATTGGTTTATAAGAGATGGCTTTGA 2832 0.3919 MGRTKVSTLFSSNNNHHYPLPLSNTINQTLVNKPNSHKDSFPLSLFKFFQRLIYGRKVDGGSRTEEEEKVYSWLYTLAQSEKNMVFEYVRSTERGLSFTEAERRLQENGPNVPLEYSFPSSWHLLWNALFHPFNMILIVLSSLSFIARDYPNGFIMLILLFISVILRFCLEHKSSKAAMKLSEFLKCPIRVQRCAGRIEQKELTVQVDHRDVVPGDIVIFEPGDLFPGDVRLISSKHLVVSQASLTGESITTDKTADVREDHITPLLDLKNICFMGTNVVSGTGTGLVISTGSNTYMSTMFSKIGKKKPPDDFEKGLRWIFYMLISVMVVVVTIMFVTDYTASKKLSKSILFAISVASALNPQMLPLIINTCLAKGALAMAKDRCIVKSLTTIREMGSMDILCIDKTGTLTMNHAILVNHLDCRGLPREKVLRYAFLNSYFKTEQKYPLDDAILAHVYSNGFKFQPSKWKKINEIPFDFIRRRVSVMLETDDRQFFGRFMVTKGALLEVIKVCSFIENFDKDEISTFSSDDYQRILNLSEELSNEGLRVIAVAIKKLEMEQTCETSNGSKRGNSDFERDMTLLGVITFFDPPKDSAKQALWCLAEKGVKAKVLTGDSLSLTTRICREVGISTTHVITGPELEELDHDTFHETVKRATVLARLTPTQKLRVVQSLQTIGNHVVGFLGDGVNDSLALDAAHVSISVDSGVPIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYVKMSVIANLGSIISLLIATLFLKYEPLTTRQLLTQNFIYSLGQIVIPWDKMDEEYLKTPHKWSERGLPMFILWNGPVCTFCDVATLLFLLFYYKAYDDEKFFHTAWFIEGLLMQTLIVHLIRTEKIPFVQAIASWPVIFSTLVISAIGIAIPLTPIGKVMGFTVLPLSYFGFLLVIFLGYFTLGQVVKRLYILVYKRWL 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05160 943 SMART Cation_ATPase_N_a_2 76 149 IPR004014 -
Vivi5g05160 943 PANTHER CATION TRANSPORTING ATPASE 87 933 - -
Vivi5g05160 943 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 940 IPR023298 -
Vivi5g05160 943 Gene3D - 150 894 - -
Vivi5g05160 943 SFLD C1.7: P-type atpase like 385 735 - -
Vivi5g05160 943 Gene3D - 415 589 IPR023299 GO:0000166
Vivi5g05160 943 Pfam haloacid dehalogenase-like hydrolase 399 698 - -
Vivi5g05160 943 NCBIfam magnesium-translocating P-type ATPase 68 942 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Vivi5g05160 943 Gene3D - 400 722 IPR023214 -
Vivi5g05160 943 SUPERFAMILY Calcium ATPase, transduction domain A 202 302 IPR008250 -
Vivi5g05160 943 Pfam Cation transporter/ATPase, N-terminus 85 144 IPR004014 -
Vivi5g05160 943 SFLD p-type atpase 385 735 IPR044492 -
Vivi5g05160 943 Pfam E1-E2 ATPase 204 382 - -
Vivi5g05160 943 Gene3D - 187 291 - -
Vivi5g05160 943 NCBIfam HAD-IC family P-type ATPase 157 448 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05160 943 NCBIfam HAD-IC family P-type ATPase 651 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05160 943 SUPERFAMILY HAD-like 576 733 IPR036412 -
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 743 758 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 316 332 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 896 917 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 437 450 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 846 867 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 813 829 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 761 772 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 PRINTS Magnesium-transporting ATPase signature 793 806 IPR006415 GO:0015444|GO:0015693|GO:0016020
Vivi5g05160 943 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 396 592 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05160 Vivi-Chr5 152632301 152637059 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05160 94 808 Primary Pumps ATPases(2) AT1G10130 27.017 1.13e-62 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05160 K01531 - gmx:100795153 1572.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05160 5 152632301 152637059 Vivi5g05160 5 152632301 152637059 ECH