Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05159 ATGGTTTTTCATCTCTATCATTGCAATGATGGTCCAAATCCTTCTCCTCAACAACCACCATCCTTCCAAACGGATCATCATCATTTCCTTAATATTCAATCTCTTCATATAGCTTTGATTGCCATGGCTTGCTTCGTTACGACGGTGATGCTTTTTTTAACATTTGTCATATTCCTAAGGAGACATAGCCATGATGATGATCACAGTGATAGAAGAAACGTGCCTGTATTGTTTGATGTACATGGTTATAGAGATTCAACTATTTCGGATGATGGTCCCGATGATGATGATGACGATGATGATGATGATGATGATGATGAGAGTGTTGTTGATCACCCGATATGGTTCATACGAACTATCGGCCTTCAACAATCTGTGATAGATTCTATTACGGTATTGAAATATAGAAAAAACGAAGGAGTTGTGGATGGGACGGAGTGTTCTGTTTGTCTTGGTGAGTTTCAAGAGGAAGAGAGTCTCAGGATTTTACCTAAGTGTATCCATGCTTTTCATATTTCTTGTATCGATAGGTGGCTTCGATCGCATCAGAATTGTCCGTTGTGTCGGGCACCTATAGTCAATGATGCTGCTGCAGAGGTGAGTGTTACAGTTACTGGAAGTGATCAGGTTGATTCAAATATTTCTGGAGAGAATCCGAACCAAGAAGGACGGAGAGAAAATTTTGATAATGTTGTTGAGGAAGGATTAGGATTAGGAGAATTTCAGGTTGTTAGAATTGATAATGATGATAATGAGAGTGATTCTGGTGTATCATCTAGTGAAAGATCATATAAAAATCATACTGTTTAG 810 0.3852 MVFHLYHCNDGPNPSPQQPPSFQTDHHHFLNIQSLHIALIAMACFVTTVMLFLTFVIFLRRHSHDDDHSDRRNVPVLFDVHGYRDSTISDDGPDDDDDDDDDDDDDESVVDHPIWFIRTIGLQQSVIDSITVLKYRKNEGVVDGTECSVCLGEFQEEESLRILPKCIHAFHISCIDRWLRSHQNCPLCRAPIVNDAAAEVSVTVTGSDQVDSNISGENPNQEGRRENFDNVVEEGLGLGEFQVVRIDNDDNESDSGVSSSERSYKNHTV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05159 269 SUPERFAMILY RING/U-box 129 195 - -
Vivi5g05159 269 MobiDBLite consensus disorder prediction 84 107 - -
Vivi5g05159 269 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 26 197 IPR044675 -
Vivi5g05159 269 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 198 IPR013083 -
Vivi5g05159 269 MobiDBLite consensus disorder prediction 247 269 - -
Vivi5g05159 269 MobiDBLite consensus disorder prediction 90 107 - -
Vivi5g05159 269 FunFam RING-H2 finger protein ATL54 122 195 - -
Vivi5g05159 269 SMART ring_2 147 188 IPR001841 -
Vivi5g05159 269 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Vivi5g05159 269 Pfam Ring finger domain 146 189 IPR001841 -
Vivi5g05159 269 CDD RING-H2_EL5-like 146 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05159 Vivi-Chr5 152630603 152631714 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05159 109 218 C3H Transcription Factor Family AT4G33565 60.909 9.68e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05159 - - psat:127106001 352.058