Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05158 ATGAAGAGACTTTCCAGCTCCGATTCTTTAGGTGCCCTCATCACAATCTGTCCACAAACAGAGGAACAAAGTCCGAGGAACAACAACAACGTGTTTCAGTCGATGTTAGAAGGATTTGATGAAGAAGGATGTGTTGAAGAGGTTGGGCAGAAGAAACGAAGGCTGAGTGTGGATCAAGTGAAGGCTTTGGAGAAGAATTTTGAAGTGGAGAACAAGCTTGAACCAGATAGGAAAGTGAAGCTGGCTCAAGAACTTGGGTTGCAACCAAGACAAGTTGCGGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAAACCAAACAGTTGGAGAGAGATTATGGAGTTCTTAAAGCTAGTTATGATGCACTTAAGGTTAATTATGAGACACTTCAACGTGATAATGAAACCTTACTCAAAGAGGTTAAGGAATTGAAATCAAGATTACAAATGGAAGAAGAAAACACAACAACAGAAAGTGATGTTTGTGTAAAAGAAGAGTTGATAACATTACAAGACACCGAAAACACAGCATCCGATGAAACCGCGACTCTTAGATCCGATTCTAAGGACATCAATTACGACTGTTTCAAAAACACCGATGTGGTAGCTTCACTGCTACCTATGGATTTCAAAGACGGTTCTTCAGATAGCGACTCTAGCGCAATCTTAAACGAAGAAAACAACAACAGTCCCAACAACGCTGCGAATTCTTCATCTGGGGTTCTTCAAAATCAGAGCTTTTTGAAGTTTGGTGGTGATTCATCTTCTTCGCCGTCTTCGATGAGTAACTGTTTTCAGTTTCAGAACGAGTATCAGACACAGTATGTGAAAATGGAAGAGCATAATTTTCTTGGTGATGAGACTTGTGATTTCTTCTCTGATGAACAACCACCGACGCTTCAATGGTATTGTTCGGAAGAGTGGAATTAA 927 0.4067 MKRLSSSDSLGALITICPQTEEQSPRNNNNVFQSMLEGFDEEGCVEEVGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKASYDALKVNYETLQRDNETLLKEVKELKSRLQMEEENTTTESDVCVKEELITLQDTENTASDETATLRSDSKDINYDCFKNTDVVASLLPMDFKDGSSDSDSSAILNEENNNSPNNAANSSSGVLQNQSFLKFGGDSSSSPSSMSNCFQFQNEYQTQYVKMEEHNFLGDETCDFFSDEQPPTLQWYCSEEWN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05158 308 Pfam Homeodomain 51 104 IPR001356 GO:0003677
Vivi5g05158 308 CDD homeodomain 50 107 IPR001356 GO:0003677
Vivi5g05158 308 SMART HOX_1 49 110 IPR001356 GO:0003677
Vivi5g05158 308 PRINTS Lambda-repressor HTH signature 77 86 IPR000047 GO:0003677
Vivi5g05158 308 PRINTS Lambda-repressor HTH signature 86 102 IPR000047 GO:0003677
Vivi5g05158 308 ProSiteProfiles 'Homeobox' domain profile. 46 106 IPR001356 GO:0003677
Vivi5g05158 308 SUPERFAMILY Homeodomain-like 49 108 IPR009057 -
Vivi5g05158 308 Pfam Homeobox associated leucine zipper 106 148 IPR003106 GO:0006355|GO:0043565
Vivi5g05158 308 FunFam Homeobox-leucine zipper protein HAT5 44 108 - -
Vivi5g05158 308 ProSitePatterns 'Homeobox' domain signature. 81 104 IPR017970 GO:0000981|GO:0006355
Vivi5g05158 308 Coils Coil 119 157 - -
Vivi5g05158 308 Gene3D - 49 113 - -
Vivi5g05158 308 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 41 302 IPR045224 GO:0003700
Vivi5g05158 308 MobiDBLite consensus disorder prediction 213 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05158 Vivi-Chr5 152549462 152551859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05158 1 308 Homeobox Transcription Factor Family AT2G22430 47.929 5.31e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi5g05158 Homeodomain 6.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05158 K09338 - gmx:100796213 402.519
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g05158 5 152549462 152551859 Vivi5g05158 5 152549462 152551859 ECH
Vivi5g05158 5 152549462 152551859 Vivi3g03218 3 54642111 54643878 PCT