Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05149 ATGGAAAAGTATGAGATAATTAAAGATATTGGATCAGGAAACTTTGGTGTTGCAAAACTTGTAAGAGAAAAATGGAGTGGAGAGTTATATGCTGTTAAGTTCATTGAAAGAGGCTTCAAGATTGATGAACACGTGCAAAGGGAGATTATAAATCACAGGTCCTTGAAACATCCCAATATTGTTAGGTTCAAAGAGGTGTTGCTCACTCCAACTCATTTAGCAATAGTGATGGAATATGCTGCTGGTGGAGAACTGTTTGAAAGAATATGTAGTGCTGGTAGATTCAGTGAAGACGAGGCAAGATATTTCTTCCAGCAGTTGATTTCTGGAGTTAGCTATTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTCGAAAACACACTTCTAGATGGAAGCTCGGCACCACGGCTAAAAATATGCGACTTTGGTTACTCAAAGTCATCTGTTCTGCACTCCCAACCAAAATCAACGGTCGGAACCCCGGCTTATATTGCACCAGAGGTCTTATCAAGAAGAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGGGTGACTTTGTATGTGATGCTTGTTGGTGCTTATCCTTTTGAAGATCCAGAAGACCCAAGAAACTTCAGAAAAACACTTCAGCGAATTCTCAGTGTCCACTATTCTATTCCTGACTATGTCCGCATCAGTCAAGAATGCAGACATCTTTTATCAAGAATATTTGTAGCCAACCCAGAGAAGAGAATTACCATACCAGAGATAAAAATGCACCCATGGTTCCTAAAAAACTTGCCACTAGAATTCACAGAGGGTGAAAATAATTTACAAACTAATGAAAACGATTCATCATCACAAAGCATAGAAGAAATATTGTCCATAATTCAAGAAGCTAGAAAAGCAGGAGATGGTCCAAAAGTTAGTGAGCAGTTTGTTGGTGGCAGCATGGATCTTGATGATTTAGATGCAGATGCTGACATAGATGACATTGAAACTAGTGGTGATTTTGTTTGTGCTTTATAA 1020 0.3873 MEKYEIIKDIGSGNFGVAKLVREKWSGELYAVKFIERGFKIDEHVQREIINHRSLKHPNIVRFKEVLLTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRNFRKTLQRILSVHYSIPDYVRISQECRHLLSRIFVANPEKRITIPEIKMHPWFLKNLPLEFTEGENNLQTNENDSSSQSIEEILSIIQEARKAGDGPKVSEQFVGGSMDLDDLDADADIDDIETSGDFVCAL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05149 339 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Vivi5g05149 339 SUPERFAMILY Protein kinase-like (PK-like) 2 267 IPR011009 -
Vivi5g05149 339 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Vivi5g05149 339 PANTHER SERINE/THREONINE KINASE 2 280 - -
Vivi5g05149 339 Gene3D Transferase(Phosphotransferase) domain 1 80 266 - -
Vivi5g05149 339 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Vivi5g05149 339 CDD STKc_SnRK2 3 259 - -
Vivi5g05149 339 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Vivi5g05149 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Vivi5g05149 339 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05149 339 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi5g05149 339 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05149 Vivi-Chr5 152412664 152415225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05149 3 273 CBL-interacting serine-threonine protein kinases AT4G24400 43.571 8.64e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vivi5g05149 Pkinase 2.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05149 K14498 - gmx:100807981 621.698