Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05146 ATGGATGAGGAAGAGCATGAGGTTTACGGAGGAGAGATCCCCGACGTCGCAGAGATGGAAGGAGACGTCGACATGTCCGCCGCCGACGATGACGCCAGTGGCATGAAGGAGCTCGACGAGATGCGACGACGCTTGAAGGAAATGGAAGATGAAGCCGCCGCTCTTCGCGATATGCACGCCAAGGTTGAGAAGGAGATTGGCTCCACTCAAGATCCTGCTGCTGCAGCTGCTTCTCAGGATAACAAGGAGGAGGCAGATGCTCGTTCTGTTTTTGTTGGCAATGTTGATTATGCATGCACCCCAGAGGAAGTTCAGCAACACTTTCAGTCATGTGGTACAGTGAACAGGGTCACTATCCTGACAGACAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAAGCTATCCTGTTGACCGAAACTGAATTGCATGGCCGACAATTGAAAGTTCTGCCTAAGAGGACCAATGTTCCTGGAATGAAACAATACCGTCCTAGGCGATTCATTCCTTACATGTCATACGGCTTCAGGAGGCCTTATGCTCCTCCTCCTTACATGTACTCCCCTTACGGATATGGGAAGGCTCCAAGGTATAGAAGGCCAAATCGTTACATGCCATACTATTAG 654 0.4924 MDEEEHEVYGGEIPDVAEMEGDVDMSAADDDASGMKELDEMRRRLKEMEDEAAALRDMHAKVEKEIGSTQDPAAAAASQDNKEEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEAILLTETELHGRQLKVLPKRTNVPGMKQYRPRRFIPYMSYGFRRPYAPPPYMYSPYGYGKAPRYRRPNRYMPYY 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05146 217 MobiDBLite consensus disorder prediction 1 20 - -
Vivi5g05146 217 SMART rrm1_1 89 160 IPR000504 GO:0003723
Vivi5g05146 217 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
Vivi5g05146 217 CDD RRM_II_PABPs 89 160 - -
Vivi5g05146 217 Gene3D - 13 171 IPR012677 -
Vivi5g05146 217 SUPERFAMILY RNA-binding domain, RBD 78 185 IPR035979 GO:0003676
Vivi5g05146 217 Coils Coil 31 65 - -
Vivi5g05146 217 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 181 - -
Vivi5g05146 217 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05146 Vivi-Chr5 152359423 152365434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05146 79 159 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 9.48e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05146 K14396 - gmx:100789721 339.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi5g04990 5 150448998 150453986 Vivi5g05146 5 152359423 152365434 PCT