Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05127 ATGGAGCGCCGTCTGCTCAAGGATTTCGACCTTCAACCTAAAAACCCTTCCGTTGAAGCTCTTCGGAGATGGAGATCCGCCGTCACTCTCGTTAAGAACCGCCGTAGACGGTTCCGTATGGTTGCCGATCTTGAGAAACGCTCCGAAGCGGAGCAGATTAAGCACGGAATCAAGGAAAAAATTCGTATTGCTCTCTATGTTCAGAAGGCAGCATTGCAATTTATTGATGCTGGTAACCGAGTTGAATACAAGTTATCAGAAGAGGCAACAGAAGCTGGTTTTGAGATACATCCAAATGAGATCGCTTCTATTGTTCGTAGTCAGGATTATAGGAACTTGAGTAATAATGGTGGAGTTGAAGCCGTTGCAAGGAAATTGTCGGTTTCTACTGATGAAGGTGTCAGTGAAGCAAGTATAGATTGCAGACAAAAAATCTTTGGGGTCAATCGTTATACGGAGAAACCTCCGCGAACGTTCCTGATGTTTGTATGGGATGCAATGCAGGACTTAACTCTAGCCATTCTCATGGTTTGTGCTGTAATTTCTATAGCTGTTGGGCTTGCCACTGAAGGGTGGCCAAAGGGAATGTACGATGGTGTCGGAATCATAATGAGTATATTTTTGGTTGTCGTTGTTACTGCTGTCAGTGACTACAAGCAATCCCTACAGTTCTTGGATTTGGACAAAGAGAAGAAAAAAATCTTTGTTCAGGTCACTAGGGATGGGAAAAGAAAGAAAATATCAATTTATGATGTAGTAGTTGGTGACATTGTTCATTTGTCAACTGGAGATCAAGTTCCAGCTGATGGAATTTATATATCTGGATACTTTTTGCTTATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCTGTATCTATAACTGAAAAACACCCTTTCCTTCTCTCGGGAACTAAAGTGCAGGATGGTCAGGGGAAGATGTTAGTCACAACTGTTGGCATGAGGACAGAATGGGGAAAATTGATGGAAACTCTAAACGAGGGAGGAGATGATGAGACACCATTGCAGGTGAAATTGAATGGAGTTGCTACTATTATTGGTAAAATTGGTTTGGGTTTCGCCATTGTGACATTTTCGGTATTGACTATAAGGTTTCTTGTCGAAAAAGCACTTCATGGCGAGTTTAGCAATTGGTCTTCAAATGATGCAACAAAGCTACTGAACTTCTTCGCTATTGCCGTAACCATAATAGTTGTTGCGGTTCCTGAAGGATTACCACTGGCTGTGACACTAAGTCTTGCTTTTGCAATGAAAAAACTAATGAATGACAAGGCGCTCGTGAGACATCTTTCTGCTTGTGAGACAATGGGTTCGGCTAGTTGCATTTGCACAGATAAGACAGGGACATTAACCACAAACCATATGGTGGTTAACAAAATATGGATATGTGAAAATACCACCCAATTGAAAGGTAATGATAGTGCGGATGAACTGAAAACGAACATATCGGAAGAAGTTCTGAGCATACTTTTGCAGGCTATATGTCAAAATACTTCTGCTGAAGTAGTTAAGGATAAAAATGGAAAGAACACAATATTGGGAAGCCCAACAGAATCAGCGCTATTGGAATTTGCCTTGCTTTTAGGTTCTGATTTCGATGCTCGCAACCGTAGTAAAGCTTATAAGATACTTAAGCTTGAGCCTTTTAATTCAGTCCGGAAGAAGATGTCTATACTCGTCAGTCTCCCTGATGGAAGTGTTCAAGCTTTCTGCAAAGGTGCATCTGAAATAATATTAGAAATGTGTGACAAAATGATTGATTGCAACGGGGAAGTAGTTGATCTTCCCGCAAATCGTGCAAATGCCGTCTTAGATGTTATAAATAGCTTTGCCTCTGAAGCTTTAAGAACTCTATGTTTGGCTGTCAAAGATATAAATGAAACGCGGGGAGGTACTAACATTCCTGATAGTGGTTATACTCTAATAGCTATAGTTGGAATCAAGGATCCTGTACGCCCTGGTGTTAAGGAAGCTGTTCAAACTTGTATCGCAGCTGGAATAACCGTCCGCATGGTCACTGGTGATAACATAAATACAGCTAAAGCTATAGCTAAGGAATGTGGTATACTTACTGATGATGGTGTAGCGATAGAGGGACCTAACTTTCGTGACTTGTCCACTGAGCAAATGAAGGATATCATACCGAGAATCCAGGTGATGGCACGATCCTTACCGCTCGACAAGCATAAGTTAGTTACCAATTTGAGGAATATGTTTGGTGAGGTGGTTGCTGTTACTGGCGATGGAACAAATGATGCTCCTGCATTGCATGAGGCTAACATTGGACTTGCCATGGGCATAGCTGGAACCGAGGTCGCAAAAGAAAAGGCTGATGTGATTATAATGGATGATAACTTCGCGACTATTGTCAATGTGGTGAAATGGGGACGGGCAGTATATATAAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTTAACGTTGTCGCGCTTATTATCAACTTCGTCTCTGCATGCATCACTGGGTCAGCACCTCTCACAGCTGTTCAGTTACTTTGGGTCAACTTGATTATGGACACTCTAGGGGCTTTAGCCCTTGCTACTGAACCTCCCAATGATGGACTTTTGAAAAGACCCCCAGTTGGAAGGGGAGAAAGCTTTATCACCAAAACTATGTGGAGGAATATCATTGGTCAGAGTATTTATCAATTGATTGTACTCGCGATTCTAAATTTTGACGGGAAGAGACTACTCAGAATTACTGGTTCAGATTCAACTGCAGTGCTCAACACTTTGATATTCAACTCTTTCGTATTTTGTCAGGTGTTTAATGAGATAAACAGCAGAGATATGGAAAAGATAAACATCTTCAAAGGCATGTTTGACAGCTGGATATTTTTGATGATAATTTTCGCCACCGTCGCATTTCAAGCGGTGATTGTTGAATTTCTTGGAGCATTTGCCAGCACTGTGCCTCTAAGCTGGCAATTCTGGTTACTCAGTGTTTTAATTGGAGCAATTAGCATGCCTATAGCTGTTATCTTGAAATGCATCCCAGTTGAAAGAAAAAATACTACAAGTAAACAACATCATGATGGTTATGATGCACTTCCATCTGGTCCTGAGCTAGCATAG 3117 0.4129 MERRLLKDFDLQPKNPSVEALRRWRSAVTLVKNRRRRFRMVADLEKRSEAEQIKHGIKEKIRIALYVQKAALQFIDAGNRVEYKLSEEATEAGFEIHPNEIASIVRSQDYRNLSNNGGVEAVARKLSVSTDEGVSEASIDCRQKIFGVNRYTEKPPRTFLMFVWDAMQDLTLAILMVCAVISIAVGLATEGWPKGMYDGVGIIMSIFLVVVVTAVSDYKQSLQFLDLDKEKKKIFVQVTRDGKRKKISIYDVVVGDIVHLSTGDQVPADGIYISGYFLLIDESSLSGESEPVSITEKHPFLLSGTKVQDGQGKMLVTTVGMRTEWGKLMETLNEGGDDETPLQVKLNGVATIIGKIGLGFAIVTFSVLTIRFLVEKALHGEFSNWSSNDATKLLNFFAIAVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDKALVRHLSACETMGSASCICTDKTGTLTTNHMVVNKIWICENTTQLKGNDSADELKTNISEEVLSILLQAICQNTSAEVVKDKNGKNTILGSPTESALLEFALLLGSDFDARNRSKAYKILKLEPFNSVRKKMSILVSLPDGSVQAFCKGASEIILEMCDKMIDCNGEVVDLPANRANAVLDVINSFASEALRTLCLAVKDINETRGGTNIPDSGYTLIAIVGIKDPVRPGVKEAVQTCIAAGITVRMVTGDNINTAKAIAKECGILTDDGVAIEGPNFRDLSTEQMKDIIPRIQVMARSLPLDKHKLVTNLRNMFGEVVAVTGDGTNDAPALHEANIGLAMGIAGTEVAKEKADVIIMDDNFATIVNVVKWGRAVYINIQKFVQFQLTVNVVALIINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPNDGLLKRPPVGRGESFITKTMWRNIIGQSIYQLIVLAILNFDGKRLLRITGSDSTAVLNTLIFNSFVFCQVFNEINSRDMEKINIFKGMFDSWIFLMIIFATVAFQAVIVEFLGAFASTVPLSWQFWLLSVLIGAISMPIAVILKCIPVERKNTTSKQHHDGYDALPSGPELA 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05127 1038 CDD P-type_ATPase_Ca_PMCA-like 142 886 - -
Vivi5g05127 1038 Pfam Ca2+-ATPase N terminal autoinhibitory domain 6 49 IPR024750 GO:0005516
Vivi5g05127 1038 Gene3D - 460 657 IPR023299 GO:0000166
Vivi5g05127 1038 SUPERFAMILY Calcium ATPase, transmembrane domain M 117 1016 IPR023298 -
Vivi5g05127 1038 Gene3D - 165 1012 - -
Vivi5g05127 1038 Gene3D - 447 798 IPR023214 -
Vivi5g05127 1038 NCBIfam HAD-IC family P-type ATPase 546 698 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05127 1038 NCBIfam HAD-IC family P-type ATPase 202 474 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05127 1038 NCBIfam HAD-IC family P-type ATPase 719 841 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05127 1038 SUPERFAMILY Calcium ATPase, transduction domain A 235 331 IPR008250 -
Vivi5g05127 1038 PRINTS P-type cation-transporting ATPase superfamily signature 450 464 - -
Vivi5g05127 1038 PRINTS P-type cation-transporting ATPase superfamily signature 777 789 - -
Vivi5g05127 1038 PRINTS P-type cation-transporting ATPase superfamily signature 281 295 - -
Vivi5g05127 1038 PRINTS P-type cation-transporting ATPase superfamily signature 753 772 - -
Vivi5g05127 1038 PRINTS P-type cation-transporting ATPase superfamily signature 650 661 - -
Vivi5g05127 1038 PRINTS P-type cation-transporting ATPase superfamily signature 672 682 - -
Vivi5g05127 1038 SUPERFAMILY HAD-like 449 858 IPR036412 -
Vivi5g05127 1038 PANTHER CATION TRANSPORTING ATPASE 89 1014 - -
Vivi5g05127 1038 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 456 662 IPR023299 GO:0000166
Vivi5g05127 1038 SFLD C1.7: P-type atpase like 432 805 - -
Vivi5g05127 1038 Gene3D - 16 77 - -
Vivi5g05127 1038 Pfam E1-E2 ATPase 235 428 - -
Vivi5g05127 1038 FunFam Calcium-transporting ATPase 650 798 - -
Vivi5g05127 1038 FunFam Calcium-transporting ATPase 770 1016 - -
Vivi5g05127 1038 NCBIfam calcium-translocating P-type ATPase, PMCA-type 107 1015 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi5g05127 1038 SMART Cation_ATPase_N_a_2 109 187 IPR004014 -
Vivi5g05127 1038 FunFam Calcium-transporting ATPase 212 333 - -
Vivi5g05127 1038 FunFam Calcium-transporting ATPase 16 76 - -
Vivi5g05127 1038 Pfam Cation transporter/ATPase, N-terminus 116 182 IPR004014 -
Vivi5g05127 1038 SFLD p-type atpase 432 805 IPR044492 -
Vivi5g05127 1038 Gene3D - 133 333 - -
Vivi5g05127 1038 FunFam Calcium-transporting ATPase 460 657 - -
Vivi5g05127 1038 PRINTS H+-transporting ATPase (proton pump) signature 753 769 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05127 1038 PRINTS H+-transporting ATPase (proton pump) signature 785 810 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05127 1038 PRINTS H+-transporting ATPase (proton pump) signature 610 628 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi5g05127 1038 Pfam Cation transporting ATPase, C-terminus 838 1011 IPR006068 -
Vivi5g05127 1038 Pfam Cation transport ATPase (P-type) 504 591 - -
Vivi5g05127 1038 ProSitePatterns E1-E2 ATPases phosphorylation site. 452 458 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05127 Vivi-Chr5 152066257 152073686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05127 57 1035 Primary Pumps ATPases AT3G57330 72.523 0.0 1468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05127 K01537 - gmx:100798481 1713.74