Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05120 ATGCAAGATCACACCCAGATAACTAAGCAAGATAACACAGAAATAACTAATACTCCTCTACAAAACCTCTCCCATCTAAGCACCAAAATGGATTCTCTTCAACGCTTCATATCTCAATCCATCAAAACCAAAACTCTCCTCCCCAAACAACACTTAGACTCACTCTCTAACCAAATCTCCTCAACCATTTGCGACGTCATCATCAATGCAACTGCTCTTCTTGCCACATGTCCGGTAACAACATCAGCAGAATGTTACACAACATGCGACAAGAAAGACACTTGCATAGATCATGACGTGACAAATTATGAAGATTCCAACATCGTGGAACTGGACGCTGTGGAGTTACTCGCGAAGCATTATCACTTCTGCGAGATATGCGGGAAAGGATTCACGCGCGACGCTAATCTACGAATGCACAAGCGCGCTCACGGGGAACAGTTCAAGACACCCGAAGCGTTGCGTTGCGTGAAGGAAACGCGCTTAACCGCGACGCGATTCTCTTGTCCATACGAAGGATGCAAAAGAAACAAGCTACACAAGAAGTTCGCGCCGTTGAAGTCGGTGTTCTGTTTGAGGAACCATTTTAAGAGAAGTCATTGTCCGAAAACTCACACGTGTGATCGGTGTCGGAGGAAGAGCTTTGCGGTGGTTTCGGATTTGAAGAGTCATATGAAGCAGTGTAAGGGAGAGTCTACATGGAAGTGTTCGTGCGGAACTACGTTTTCTAGGAAGGAGAAACTGTTTGGACACGTGGCGCGGTTTGAGGGGCATTCTCCGGCGTTTGTTGAGGCGGCGGGAGAAGAAGAGAAAGGTAAATCCGTGGCGGCGGAAGGGGAAAGTGTGGCCGAGGGTGCAACTTTGACCGAAGAAAGTGATGGGTTACCTGATGGTTTCTTTGATGATTTGGATAAGTTTTGGGTTTGA 927 0.4693 MQDHTQITKQDNTEITNTPLQNLSHLSTKMDSLQRFISQSIKTKTLLPKQHLDSLSNQISSTICDVIINATALLATCPVTTSAECYTTCDKKDTCIDHDVTNYEDSNIVELDAVELLAKHYHFCEICGKGFTRDANLRMHKRAHGEQFKTPEALRCVKETRLTATRFSCPYEGCKRNKLHKKFAPLKSVFCLRNHFKRSHCPKTHTCDRCRRKSFAVVSDLKSHMKQCKGESTWKCSCGTTFSRKEKLFGHVARFEGHSPAFVEAAGEEEKGKSVAAEGESVAEGATLTEESDGLPDGFFDDLDKFWV 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05120 308 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 90 281 IPR044300 GO:0010044|GO:0010447
Vivi5g05120 308 Gene3D Classic Zinc Finger 119 152 - -
Vivi5g05120 308 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Vivi5g05120 308 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Vivi5g05120 308 SUPERFAMILY beta-beta-alpha zinc fingers 119 146 IPR036236 -
Vivi5g05120 308 SMART c2h2final6 205 226 IPR013087 -
Vivi5g05120 308 SMART c2h2final6 167 200 IPR013087 -
Vivi5g05120 308 SMART c2h2final6 122 144 IPR013087 -
Vivi5g05120 308 Gene3D Classic Zinc Finger 202 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05120 Vivi-Chr5 152033707 152034700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05120 108 262 C2H2 Transcription Factor Family AT1G34370 56.522 1.00e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi5g05120 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi5g05120 - - cam:101510069 389.808