Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi5g05116 ATGGATGATAGCCGAGCACACTCACACTCTCCCAGTAACTCTCTCACCGCGTTAACATTTCATCTTTCACCATTACTATATATTCTCTATTCACCTTCATCTTTCCCTTTCTTTTCTCTCTCTCAAATTTTTCATTCTTCTGCATGTGTTTTCATCCTTCATATGGCTCTCAACAACAATCGCTACCGTCAACCTAATCAATTCGATATTCAGCAAATTTTGTCAGAAGCGCAATATAGATGGTTGCGCCCAGCTGAAATTTGTCAAATTCTCACTAACCATAATCACTTTCAGATTACTTCAGAGCCTGCAAATATGCCTCCAAGTGGTTCACTTTTTCTATTTGATCGGAAGGTGATGAGATACTTTAGAAAAGATGGACATAATTGGAGGAAGAAAAAAGATGGAAAAACTGTTAGGGAAGCTCATGAGAGACTTAAGGCTGGAAGTGTGGAGGTATTGCACTGCTACTATGCTCATGGAGAACAAAATCAAAATTTTCAAAGACGAACTTACTGGATGCTTGAGGATGAACTCTCGCACATTGTTCTAGTCCATTATCGGGAAGTCAAGGGAAACAAGGAAACTTTAATATGTTCCAAAGAAAATGAAGAATCTAATCCTCATTATGCTCAACAAACATACAAGGCTATGCCCAACACAGAGATGGAGACTTCTTTACCGTTTAGCATGAATAGTGCTCAACCATCAGATTACGAAGAAGCTGAATCAGCATTCAATAGCCATGCAAATTCCGATTTCCACTCTTTTCTTGAGATGCAACACCCTGTTGCTCAGAAGATTAAAGCTCAACAACTCGCTGATTTTAACTGTCCTCTACCACTCAAAGCTGATCAAGAAAGGTTGCCTGTCATTAATAATGTTGGATTGACATGTGAACCCTCAAAACTCCTTGGATTTTCATCATGGCAAGATATCTTAGAAAATAATGCCGGAAGTCATAACGTGCCTTTTCAGCATTTTTTTCCTGAAACACAATTCAATGACATGGGAATAAATAGTACTTCTCAAGGATATGAAGTAATGGGGAAACATCTAAGCATCGGCATTTCTAATCACCAGGAGAATGGAAGTCTTATACAAAATAAAGGAAATTGGCAGGATTCTGGTTTTAATTCTTTAAGCACATCCAGTTGGCCCAAAGATAACGTGTGTTCAGGCTCAACAAGTGAGGTTAGTTATAGTAACAATGAGCAGGAAGTTAACAAAGTTGATTTTCGACAATCCTTGGAACGGTTCCTTCTTCATCCACACCAACAACACAAAGCTAAGCAAAATAGCCCTCACGAAATACTTTTACAAGCAGAATCCATGTTAAAATCGGATCTAGAGGTCGATAGAAGCGTAGGTGGAATACAAGATATTTGTTTCACTTCAAACAAGAGTCTATTACATGTATCTGTAGCAGAAGAGGGCATGAAGAAGCTTGACAGTTTCAACCGATGGATGAGTAAAGAACTAGGAGATGTCGAAGAACCGAGCAAGCAATCCACTTCTAGTGCTTATTGGGATACAATCGAAAGCGAAAATGGAATTGACAGTGTAACTATTCCTTCCCATGTGCACCTAGACAACTATGTCCTTGATCCATCAATTTGCTATGATCAGCTTTTCACAATCATTGATTATTCCCCAAGTTGGACATTTGAAGACTCAGAAATAAAGGTTCTCATTTCGGGACGATTCTTAAGGAGTCAATATGAAGCAGAAGATTGTAAATGGTCATGCATGTTTGGCGAGGTAGAAGTGCCAGCGGAGATAATCGGGAATGGTGTTCTCTGCTGTCATACTCCACCACACAAGGCTGGCAGGGTTCCTTTCTATGTAACATGTTCTAATAGGTTAGCATGTAGTGAAGTGCGTGAATTCGATTTTCGAGTCAATTGTACTCAAGAAGCCAACACTGCAGGTGAGAACAGAAGCAGCAACACTCTTGAGACTTTTAATAAACGGTTTGGAGAACTGTTGTCGCAGGATCAAGAGTTCCCTCAGAGTTTAGATTCAGTTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCATTGTTTAGGAGGGAGGATGATGAATGGGAAAAAATACTGAAATATACTCTAGAGAAAGATTTTTCTCCAGAACTTGTACAGGAGAAGCTGTTTCAAAATCTTCTAAAGGATAAGCTAAATTCATGGCTCCTTCAGAAAACAACCGAAGATGGAAAAGGCCCAAATGTATTAGATGAAGGTGGCCAAGGTGTGCTTCATTTTGCAGCTGCTCTTGGCTACGACTGGGCCTTGGAACCAACAATAGTTGCTGGTGTGAATGTGAACTTTCGCGATGTTAATGGATGGACGGCTCTTCATTGGGCAGCTTTTTGTGGCAGGGAGAGGACAGTTGCTTCCCTCATTTCTCTTGGAGCAGCACCAGGAGCACTTACTGACCCATGTCCACAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCGAATGGACACAAAGGAATTGCTGGTTATCTTGCAGAATCTTTCCTGAGTGCACAACTCAAGTCTATTGATTTGAAAAGAGAAGCGGGAGAAAGTTTTGAATCAAAAATAGTACAAAGAGTCCATGAACAAAACACTTTTCAACTTAACAATGAGAGAATATCACATGAACTATCAATGAAAGATTCATTGGCTGCAGTGTGCAATGCAACTCAAGCTGCGGCTCGTATTCATCAAGTTTTCAGAGTGCAATCGTTTCAGAGAAAACAGCAAAAGGAACATAGTATTGACAAATTTGGAATGTCTGATGAACGCGCTCTTTCACTGATAGCAGCAAATGCCAAGTCACACAAGTTTGGACAACGTGATGAGCCTGTTCATGTTGCTGCAACACGAATTCAGAACAAGTTTCGCAGTTGGAAAGGTAGAAAAGATTTTTTGATTATTCGACAGAGAATTGTAAAAATTCAGGCTCACGTGAGAGGTCACCAAGTTAGGAAAAACTATGGAAAGATAATTTGGTCGGTTGGGATCGTGGAAAAGATTATATTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTCAAATCTGAGGCCATCTCCGAGGGAGCTATGGTACAAGATGCATCATCTTCCACTGAAGATGACTACGATTTTTTGAAAGAAGGCAGAAAGCAAACTGAGAAAAGGTTGGAGAAAGCACTTGCTAGGGTGAAGTCGATGGCTCAGTATCCAGATGCAAGAGACCAATACCACAGGCTATTGAATGTTGTAACTGATATACAAGAAAACCAGGTAAAGCAAGATTCGAGTTTTAGCAATTCAGAAGAAACAAGACAGAGACAATTCAATAACCTCGTTGATCTTGAAGCATTGCTGGACGAAGATACTTTCATGTCTACTGACACTTAG 3408 0.4023 MDDSRAHSHSPSNSLTALTFHLSPLLYILYSPSSFPFFSLSQIFHSSACVFILHMALNNNRYRQPNQFDIQQILSEAQYRWLRPAEICQILTNHNHFQITSEPANMPPSGSLFLFDRKVMRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNQNFQRRTYWMLEDELSHIVLVHYREVKGNKETLICSKENEESNPHYAQQTYKAMPNTEMETSLPFSMNSAQPSDYEEAESAFNSHANSDFHSFLEMQHPVAQKIKAQQLADFNCPLPLKADQERLPVINNVGLTCEPSKLLGFSSWQDILENNAGSHNVPFQHFFPETQFNDMGINSTSQGYEVMGKHLSIGISNHQENGSLIQNKGNWQDSGFNSLSTSSWPKDNVCSGSTSEVSYSNNEQEVNKVDFRQSLERFLLHPHQQHKAKQNSPHEILLQAESMLKSDLEVDRSVGGIQDICFTSNKSLLHVSVAEEGMKKLDSFNRWMSKELGDVEEPSKQSTSSAYWDTIESENGIDSVTIPSHVHLDNYVLDPSICYDQLFTIIDYSPSWTFEDSEIKVLISGRFLRSQYEAEDCKWSCMFGEVEVPAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNCTQEANTAGENRSSNTLETFNKRFGELLSQDQEFPQSLDSVSVNEKSQLRSKISSLFRREDDEWEKILKYTLEKDFSPELVQEKLFQNLLKDKLNSWLLQKTTEDGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSAQLKSIDLKREAGESFESKIVQRVHEQNTFQLNNERISHELSMKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEHSIDKFGMSDERALSLIAANAKSHKFGQRDEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYGKIIWSVGIVEKIILRWRRKGSGLRGFKSEAISEGAMVQDASSSTEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTDIQENQVKQDSSFSNSEETRQRQFNNLVDLEALLDEDTFMSTDT 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi5g05116 1135 ProSiteProfiles CG-1 DNA-binding domain profile. 70 196 IPR005559 GO:0003677
Vivi5g05116 1135 ProSiteProfiles Ankyrin repeat region circular profile. 783 808 - -
Vivi5g05116 1135 Pfam IQ calmodulin-binding motif 982 1000 IPR000048 GO:0005515
Vivi5g05116 1135 SMART CG_1_2 73 191 IPR005559 GO:0003677
Vivi5g05116 1135 SMART ANK_2a 822 851 IPR002110 GO:0005515
Vivi5g05116 1135 SMART ANK_2a 783 812 IPR002110 GO:0005515
Vivi5g05116 1135 Pfam IPT/TIG domain 546 621 IPR002909 -
Vivi5g05116 1135 SUPERFAMILY E set domains 546 632 IPR014756 -
Vivi5g05116 1135 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 68 1096 - -
Vivi5g05116 1135 Gene3D - 711 872 IPR036770 -
Vivi5g05116 1135 FunFam Calmodulin-binding transcription activator 2 540 637 - -
Vivi5g05116 1135 ProSiteProfiles Ankyrin repeat profile. 783 815 IPR002110 GO:0005515
Vivi5g05116 1135 ProSiteProfiles IQ motif profile. 980 1004 IPR000048 GO:0005515
Vivi5g05116 1135 FunFam Calmodulin-binding transcription activator 2 712 859 - -
Vivi5g05116 1135 SUPERFAMILY Ankyrin repeat 739 845 IPR036770 -
Vivi5g05116 1135 Pfam CG-1 domain 76 189 IPR005559 GO:0003677
Vivi5g05116 1135 Pfam Ankyrin repeats (3 copies) 755 845 IPR002110 GO:0005515
Vivi5g05116 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 945 1007 IPR027417 -
Vivi5g05116 1135 Coils Coil 1049 1069 - -
Vivi5g05116 1135 ProSiteProfiles IQ motif profile. 958 986 IPR000048 GO:0005515
Vivi5g05116 1135 Gene3D - 956 1003 - -
Vivi5g05116 1135 Gene3D Immunoglobulins 540 637 IPR013783 -
Vivi5g05116 1135 SMART iq_5 979 1001 IPR000048 GO:0005515
Vivi5g05116 1135 SMART iq_5 956 978 IPR000048 GO:0005515
Vivi5g05116 1135 FunFam Calmodulin-binding transcription activator 2 956 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi5g05116 Vivi-Chr5 151977120 151984612 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi5g05116 67 1109 CAMTA Transcription Factor Family AT5G64220 47.152 0.0 877
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi5g05116 Ank_2 4.6e-07 CL0465